Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c14
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122...    29   3.7  
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009     29   4.9  
10_08_0344 + 16978501-16978664,16978685-16978746,16979922-169800...    28   8.6  

>10_08_0762 -
           20410681-20411834,20411999-20412098,20412200-20412298,
           20412563-20414133,20415080-20415128
          Length = 990

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 255 RNLSV*SMLETIRLNKATLLGENSDIHLGQWTLYPANK 368
           +N+   +  E + ++KA LLGE+S  H+G  T    NK
Sbjct: 387 KNMIAANQQENLSVSKAKLLGEDSSNHIGSITEESINK 424


>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
          Length = 754

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 560 VRHKASRRSHTDRSSAMRFTSVPANQIVFISAARFASGGLVLGCQS 423
           V +  SR       S  RFT +  N +  I+  R ASG  V GC S
Sbjct: 117 VGYDLSRTPFLPSPSRNRFTVIGCNTLGLITGYRGASGQYVTGCYS 162


>10_08_0344 +
           16978501-16978664,16978685-16978746,16979922-16980071,
           16981131-16981276
          Length = 173

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = -1

Query: 569 SFQVRHKASRRSHTDRSSAMRFTSVPANQIVFIS 468
           S+Q + K  ++   ++ ++M +T  P+++I+F+S
Sbjct: 16  SYQKKKKKKKKKKREQETSMNWTMFPSHEILFLS 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,224
Number of Sequences: 37544
Number of extensions: 290398
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)