Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c14
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    29   3.4  

>AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical
           protein C09E8.1b protein.
          Length = 756

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 481 IWLAGTEVKRIAEDRSVWLLLEALCLTWKLYILKQQQQIRQ 603
           +W++ T V    + RSV LL+  +C  W L+ +++ QQ  Q
Sbjct: 636 LWVSSTRVAN--QYRSVLLLIFVVCHIWTLFEMRKCQQYSQ 674


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 481 IWLAGTEVKRIAEDRSVWLLLEALCLTWKLYILKQQQQIRQ 603
           +W++ T V    + RSV LL+  +C  W L+ +++ QQ  Q
Sbjct: 636 LWVSSTRVAN--QYRSVLLLIFVVCHIWTLFEMRKCQQYSQ 674


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,129,450
Number of Sequences: 27780
Number of extensions: 258869
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)