Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7c10
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    41   2e-04
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.0  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    27   3.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   6.2  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   8.2  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.2  

>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +1

Query: 355 VFHSKPKILFCDLTIPLGETKTFWYRESLPIEAPPSYRGTSVKYSYKITIATQ 513
           V  ++P IL  D+T+  GE K F  +  +P+   P+Y+G + ++ + + I  Q
Sbjct: 124 VLLTRPDILGVDITLSPGEEKCFRLKRRIPLRTAPTYKGLAFRFQHALVIGVQ 176


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 615 FITTQSSKILHIYYWAYWQHSKRNSDHFN 529
           F+TTQ++ IL   + A+W +S  NS   N
Sbjct: 904 FVTTQATSILIDLWVAFWTNSSVNSPDVN 932


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +1

Query: 160 CISFCYTAQPEHRNSQSHSDTLENLAWASA 249
           C+S  Y   PE +   +H+D +++  W ++
Sbjct: 124 CVSVDYRLAPESKFPVAHNDAIDSFKWVAS 153


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 196 RNSQSHSDTLENLAWASAQFHCFYSTSGAQGDKTPILGKTTS--LEVAACDVGDAVFHSK 369
           +N  + +D  +NL  A  +F CF        D      K +    E+ + +VG  V +S 
Sbjct: 717 KNQLNGNDETQNLVLALNKFGCFAKEMVCLRDVNDWNIKLSEKLCEICSLEVGPIVCYSS 776

Query: 370 PKILF 384
            K+LF
Sbjct: 777 LKVLF 781


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/57 (24%), Positives = 22/57 (38%)
 Frame = +1

Query: 175 YTAQPEHRNSQSHSDTLENLAWASAQFHCFYSTSGAQGDKTPILGKTTSLEVAACDV 345
           Y   P     +S +DT       +      YSTSG+    TP   + T+   +  D+
Sbjct: 134 YEYHPSSERHKSTNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTSVNDI 190


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +1

Query: 373 KILFCDLTIPLGETKTFWYRESLPIEAPPSYRGTSVKYSYKITIATQKVGSHIKMVRIP 549
           K L CDL IP+ E K F  ++S      P+Y G+S +     T+ +QK     K +++P
Sbjct: 300 KYLSCDLGIPIQEHKRF--KQSPVASNMPTY-GSSNR-----TVQSQKRSIRDKYIQMP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,224
Number of Sequences: 5004
Number of extensions: 65414
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)