Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7b24
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 30 0.29
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.38
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 29 0.67
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 3.6
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 26 3.6
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 6.2
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 6.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 8.3
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 8.3
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 29.9 bits (64), Expect = 0.29
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -1
Query: 388 ASIIFCFLVSIS----ASRALSGVVISFFTACVCATHFTVTFSNNLIAATSPYS 239
A ++F F S ASR + G+V FF + VC ++++T NL+ T+ S
Sbjct: 429 APVVFIFASSTKEQHYASRLVVGIV-HFFFSLVCVVYYSITPLRNLVGFTTKRS 481
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.38
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 2/167 (1%)
Frame = -1
Query: 550 VSISSSSLTAAF--ISLNSPSDLSHSARNKLCSYCFSCNIIXXXXXXXXXXXXXXKASII 377
+SISSSS ++ F S +SPS +S S + + S +SI+
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSS-STILSSPTPSTSSLMISSSSIISGSSSIL 650
Query: 376 FCFLVSISASRALSGVVISFFTACVCATHFTVTFSNNLIAATSPYSLMISSVLTCSVICG 197
+ +I S +LS ++ ++ + ++ V+ S++LI ++SP + SS +
Sbjct: 651 SSSISTIPISSSLS----TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPS----- 701
Query: 196 VSDTGFALRSLSLEENRDSSCSFFETASSKVSPILAENSTLDSCFNS 56
S + + S SL SS S +SS P +STL + +S
Sbjct: 702 -SSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSS 747
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 28.7 bits (61), Expect = 0.67
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 345 LDAEMLTRKQNIMEALTNYR---DKETSLRHFEMILQEKQYEHNLLRAE-WDKSLG 500
LDA ML RKQ + E L +YR + LR EM + KQ +N + W+ LG
Sbjct: 98 LDA-MLKRKQKLSEELDHYRAIISSKRELRAQEMEAKRKQDSYNNPELKFWEDYLG 152
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +3
Query: 339 RALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMK 518
R + ++ LT+ + + E + LQE + E+++L E++ ++ LRD
Sbjct: 183 RNIASDFLTKNPTDENSAVEIPESELQTFFTQQQLQELEQENDVLLQEFEHTMERLRDTG 242
Query: 519 AAVSD 533
+++D
Sbjct: 243 KSLAD 247
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +3
Query: 342 ALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKA 521
+L++E+ K + DK+ + H+E +++EKQ + L E + +++
Sbjct: 713 SLESEISLLKDKYTVVSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSRDELQI 772
Query: 522 AVSDDEE 542
V EE
Sbjct: 773 QVEKVEE 779
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 3.6
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +3
Query: 270 LEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQE 449
+EK T+ T+ KL+ T R +ML + ++ TS FE +LQE
Sbjct: 64 IEKKTIYLCRPTYENAKLVATHVRQFQRDMLRIESTVIVL-------PTSNILFETVLQE 116
Query: 450 KQYEHNLLRAEW 485
+ LL EW
Sbjct: 117 EGVFGELLVTEW 128
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.2
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = -1
Query: 259 AATSPYSLMISSVLTCSVICGVSDTGFALRSLSLEENRDSSCSFFETASSKVSPILAENS 80
+A + SL SSV+ S +S + S S + SS SF ASS L +S
Sbjct: 28 SAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSS 87
Query: 79 TLDSCFNSCS 50
+ S +S S
Sbjct: 88 SQQSSSSSAS 97
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +3
Query: 270 LEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQE 449
L+ + + TH +K + T ++ ++ + N+++ + K+ S HF L +
Sbjct: 280 LQFFSTSLIQYTHICRKCVITILQSYQQLIVDQPANLLKF--SLLSKKVS--HFLFTLAQ 335
Query: 450 KQYEHNLLRAEWDK 491
K E EWDK
Sbjct: 336 KNIESFFFPTEWDK 349
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 18 FKTLKEVS-QNFEQELKQLSNVLFSA 92
FKT +S NF+ ++K L NVL +A
Sbjct: 355 FKTSVSISCSNFDSQIKYLENVLLNA 380
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 8.3
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 306 HAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQE-KQYEHNLLRAE 482
H V+ L+ D+ +D L+ + + A TN H++ +Q KQ N+L
Sbjct: 248 HPVRSLLNLIDKFIDK--LSEQSGNVTADTN--------EHYDRAMQYLKQLVENILNRS 297
Query: 483 WDKSLGELRDMKAAVSDDEEM 545
D + L+ ++ +DEE+
Sbjct: 298 LDNLIDTLKQVQHDAENDEEL 318
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 375 NIMEALTNYRDKETSLRHFEMILQEK--QYEHNL 470
N++++ TNY + T L LQEK Y++NL
Sbjct: 507 NVLDSCTNYVGRYTFLNELFEYLQEKTTYYKNNL 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,695
Number of Sequences: 5004
Number of extensions: 42710
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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