Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7b24
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical pr...    31   0.46 
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    30   1.4  
Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81558-2|CAB04540.2|  144|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U64842-9|AAB37081.2|  458|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AJ288951-1|CAB97346.1|  458|Caenorhabditis elegans Pellino prote...    29   1.9  
Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL034393-9|CAA22314.1|  248|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical...    29   3.3  
Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical ...    28   4.3  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   5.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   5.7  
AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl p...    27   7.5  
Z70682-3|CAE46662.1|  187|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF077537-11|AAC26280.1|  230|Caenorhabditis elegans Hypothetical...    27   10.0 

>Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical
           protein C54G4.2 protein.
          Length = 423

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 26/96 (27%), Positives = 42/96 (43%)
 Frame = +3

Query: 174 RAKPVSLTPQITEQVKTEEIIKEYGDVAAIKLLEKVTVKCVAQTHAVKKLITTPDRALDA 353
           + K  S+TP     +KT ++I   GD    +     T K V+  H  KK  +T +     
Sbjct: 61  KRKSASITPSTESTMKTSDLISSIGDHTEGEPSNGNT-KFVSHLH--KKQNSTEEDKKVP 117

Query: 354 EMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYE 461
           E +  K      +    +KE S + F MIL +K ++
Sbjct: 118 ENIEMKNGRRPVVYVEEEKEKSEKKFHMILAQKFFK 153


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 540 PRHH*LLPSYPSIHRAIYPTQPATSCA 460
           P HH L PS+P  H +   + P++SC+
Sbjct: 125 PSHHQLHPSHPPPHSSFSSSSPSSSCS 151


>Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical
           protein T05F1.5 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 279 VTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQY 458
           V   C   TH     +  P   +  ++L   QNI+E +    D +T+++H E  L +K  
Sbjct: 300 VIALCALATHYNLHSVVPPLPPM--QLLENDQNILEVI----DNQTTMQHLENYLSKKAM 353

Query: 459 EH 464
           EH
Sbjct: 354 EH 355


>Z81558-2|CAB04540.2|  144|Caenorhabditis elegans Hypothetical
           protein F59D12.2 protein.
          Length = 144

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = -1

Query: 217 TCSVICGVSDTGFALRSLSLEENRDSSCSFFETASSKVSPILAENSTL-------DSCFN 59
           TC   CG+ D  FA R+     +    C    T  S +  +L   + L        +C N
Sbjct: 61  TCFKACGMEDIQFAARAAGEMFSTIKMCVLMSTIISLLLLVLLSTALLYFMCSYNQNC-N 119

Query: 58  SCSKF*LTSF 29
           SC+KF L SF
Sbjct: 120 SCTKFSLPSF 129


>U64842-9|AAB37081.2|  458|Caenorhabditis elegans Hypothetical
           protein F25B4.2 protein.
          Length = 458

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 70  CPTCYSPLKSERP-SRMRFQRNC 135
           CP CY  L +ERP  R+ FQ NC
Sbjct: 424 CPFCYQLLATERPFVRLIFQDNC 446


>AJ288951-1|CAB97346.1|  458|Caenorhabditis elegans Pellino protein
           protein.
          Length = 458

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 70  CPTCYSPLKSERP-SRMRFQRNC 135
           CP CY  L +ERP  R+ FQ NC
Sbjct: 424 CPFCYQLLATERPFVRLIFQDNC 446


>Z66567-4|CAA91493.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK455.4 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 181 FALRSLSLEENRDSSCSFFETASSKVSPILAENST 77
           +A ++++  ENR  SC F   A   V  ++A+NST
Sbjct: 57  YAKKAINEPENRKMSCLFCTFAVDGVQALIAQNST 91


>AL034393-9|CAA22314.1|  248|Caenorhabditis elegans Hypothetical
           protein Y18D10A.11 protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +3

Query: 372 QNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKS----LGELRDMKAAVSDDE 539
           +++ E L N +D E S+   +  + + + E+N+L+A W +     + EL D K  ++   
Sbjct: 120 KSLSEQLANAQDAEVSMTTLKETVAKLEEENNVLQATWAEERSGLVNELIDTKEKLAKSA 179

Query: 540 EMDT 551
           +  T
Sbjct: 180 QAQT 183


>AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical
           protein K05F6.11 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/55 (27%), Positives = 34/55 (61%)
 Frame = +3

Query: 390 LTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMDTN 554
           ++++  K+ S+R F +++  KQ+ H++   ++DK+  +L  +K  V DD+ +  N
Sbjct: 91  ISHWIKKDGSVRLF-VVVHSKQFRHSIAILDFDKTKWQLNHVK-TVRDDKFVRPN 143


>AC006627-10|AAK85465.1|  499|Caenorhabditis elegans Hypothetical
           protein E01A2.8 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/55 (27%), Positives = 34/55 (61%)
 Frame = +3

Query: 390 LTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMDTN 554
           ++++  K+ S+R F +++  KQ+ H++   ++DK+  +L  +K  V DD+ +  N
Sbjct: 247 ISHWIKKDGSVRLF-VVVHSKQFRHSIAILDFDKTKWQLNHVK-TVRDDKFVRPN 299


>Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical
           protein R11A8.3 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 177 AKPVSLTPQITEQVKTEEIIKEYGDVAAIKLLEKVTVKCVAQTHAVKKLITTPDRALDAE 356
           +KP+ L P   +  K  ++ +  G VA   LL+K+ +      HA+  ++T P    + E
Sbjct: 382 SKPMILMPLFADHAKNSKVAESKG-VAV--LLDKMRLSRRRVVHAIYTILTNPKYTQNCE 438

Query: 357 MLTR 368
             +R
Sbjct: 439 KFSR 442


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical protein
            ZK593.5 protein.
          Length = 1326

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 339  RALDAEMLTRKQNIMEALTNYRDKETS--LRHFEMILQEKQYEHNLLRAEWDKSLGEL-R 509
            R  D      + ++ E+  N  DK     ++H E  + +   +H   + E+D+S+  L R
Sbjct: 1048 RIEDVSNYKLRLDMAESRLNSTDKAEGDKVKHLEEKINQMVADHRRKQIEYDESMDALQR 1107

Query: 510  DMKAAVSDDEEM 545
            +MK   SD+ E+
Sbjct: 1108 EMKEVESDNLEL 1119


>AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical
           protein F42G2.6 protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 327 TTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGEL 506
           T P+      M  RKQN +      ++K T   H E   QEK+   N ++ + ++ +  +
Sbjct: 583 TKPEYRKKLRMSKRKQNELLQKLWLKEKNTENTHAEKTNQEKKLTENAVQEQLEQMMKMI 642

Query: 507 RDMKAA 524
           ++ + A
Sbjct: 643 QEERRA 648


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 354 EMLTRKQN--IMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAV 527
           E ++R  N  +++ L++Y    T +  F  I+ + Q   +    E+DK +  LRD+    
Sbjct: 378 EAISRDLNSQLLKVLSSYNLMRTPIAEFNEIMSQCQALFSKWDDEYDKFIALLRDINKKK 437

Query: 528 SDD 536
            DD
Sbjct: 438 RDD 440


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 354 EMLTRKQN--IMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAV 527
           E ++R  N  +++ L++Y    T +  F  I+ + Q   +    E+DK +  LRD+    
Sbjct: 378 EAISRDLNSQLLKVLSSYNLMRTPIAEFNEIMSQCQALFSKWDDEYDKFIALLRDINKKK 437

Query: 528 SDD 536
            DD
Sbjct: 438 RDD 440


>AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 5 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 216 VKTEEIIKE-YGDVAAIKLLEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNI 380
           V+  E +K+ YGD+A I +  +  ++  +    +K   T  +RA+    LTR+Q +
Sbjct: 14  VRALEKLKDLYGDLAQIPIPTQGRIEKKSGDEFIKVTTTWDNRAMQLNKLTRQQRV 69


>Z70682-3|CAE46662.1|  187|Caenorhabditis elegans Hypothetical
           protein F08G5.3b protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +3

Query: 306 HAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEH-NLLRAE 482
           H V K   T D  + A ++  K +  +A      ++   R   +   +K+Y+H   +   
Sbjct: 5   HEVVKYAPTEDNEIHA-LIRGKPSFCKANIRVNTQQFQER---LTYLDKRYDHLRKMTHS 60

Query: 483 WDKSLGELRDMKAAVSDDEEMDT 551
             K + EL D+    +D+E MDT
Sbjct: 61  LRKKVNELEDIMRLDNDEENMDT 83


>AF077537-11|AAC26280.1|  230|Caenorhabditis elegans Hypothetical
           protein F16G10.13 protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 545 HFLVITDCCLHIPQFTERFIP--LSPQQ 468
           + LV+T+CC+ +    + +IP  LSP+Q
Sbjct: 12  YLLVVTECCMRMVPPDDAYIPSTLSPEQ 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,972
Number of Sequences: 27780
Number of extensions: 248228
Number of successful extensions: 836
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)