Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7b21
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    47   2e-06
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    46   5e-06
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    37   0.002
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    34   0.017
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.47 
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   7.7  

>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 40/82 (48%)
 Frame = +1

Query: 427 RAFSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 606
           +A+ +++Y  AI+ YT AI  +    + F+ R   Y  +      IKD + AL L+    
Sbjct: 160 KAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAACYAAIGDFEQVIKDTSEALSLDSSYV 218

Query: 607 AAYKFRGRAYRLLGKFEESSXD 672
            A   R  AY  LGK +E+  D
Sbjct: 219 KALNRRSAAYEQLGKLDEALMD 240


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 26/82 (31%), Positives = 38/82 (46%)
 Frame = +1

Query: 433 FSEQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELNCDSAAA 612
           F    +  AI  YT   +  P     F  R   YLK+  P  CI+DC  A+EL+ + A A
Sbjct: 410 FKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKA 469

Query: 613 YKFRGRAYRLLGKFEESSXDLC 678
           Y  + +A  +L  + +   D C
Sbjct: 470 YVRKAQALFMLKDYNK-CIDAC 490



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 454 EAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 594
           E I     AI+L+P  A  + ++ Q    L   N CI  C  A E++
Sbjct: 451 ECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 439 EQKYDEAINLYTAAIQLNPQSALLFAKRGQVYLKLNKPNACIKDCTHALELN 594
           ++ Y + ++  T A+ +NP    +  +RG  YL+L  P+   +D  H+LEL+
Sbjct: 54  KKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELD 105


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 433 FSEQKYDEAINLYTAAIQLNPQSAL--LFAKRGQVYLKLNKPNACIKDCTHALELNCDSA 606
           + E+KY EAI  YT AI L   SAL   ++ R   Y+++ +    + D   +  +  D  
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDAKQSDRIKPDVP 93

Query: 607 AAYKFRGRAYRLLGKFEES 663
                  +AY  L    E+
Sbjct: 94  KTQSRIRQAYEGLSILNEA 112


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -1

Query: 611 AAALSQFNSKACVQSLIHAFGLFSFRYTCPRLANNKALCGFNCMAAVYRLIASSYFCSEN 432
           A  +SQF  K   +  IH + L    Y+      N  LC F  +  +   + SS F  ++
Sbjct: 713 AKFISQFLEKTSTEFQIHLWYLLYQAYSSAHRPYNSLLCAFQSLKIILIRLCSSSFSIQD 772

Query: 431 A 429
           A
Sbjct: 773 A 773


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 85  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 210
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,086
Number of Sequences: 5004
Number of extensions: 46065
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)