Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7b20
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 71 5e-13
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986... 32 0.37
04_04_0344 - 24536516-24537323,24537449-24537567,24539044-245394... 31 0.85
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44... 29 2.0
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 29 3.4
06_03_1167 + 28111923-28113218 28 6.0
06_03_0416 + 20568087-20568702,20568767-20570313 28 6.0
06_01_0476 - 3388176-3389267 28 6.0
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 28 6.0
03_01_0296 + 2284385-2285629,2287632-2288594 28 6.0
11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292 27 8.0
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 71.3 bits (167), Expect = 5e-13
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Frame = +3
Query: 192 IGSRVKCNDD---FGTVXYIGEVQGYKGLWYGIQWDNESRGKHDGCLDGIQYFKTSKPSA 362
+G RV D GTV Y+G V G+ G W G+ WD + G+HDG L G +YF + +
Sbjct: 8 LGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAGERS 67
Query: 363 GSFVRPNKIIPSKTCAEAIRQYYGDPEDETLAAHRRTIINEWKREMGAPFIEMVGFEKIH 542
SF RP + T +AIR Y E + + ++ + +E+VG K+
Sbjct: 68 ASFARPTALSAGITLPDAIRNRYRVEEFTKEEQDEMYVFSSSQKRVS---VELVGKNKVE 124
Query: 543 QKQK 554
+K K
Sbjct: 125 EKLK 128
>04_03_0184 +
12395349-12395542,12396821-12397467,12398119-12398655,
12399087-12399239,12399315-12399809,12400032-12400555
Length = 849
Score = 31.9 bits (69), Expect = 0.37
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +3
Query: 135 CNGAMDSCNGVDGNDNNVYIGSRVKCNDDFGTVXY-------IGEVQGYKGLWYGIQWDN 293
C A +C GV+ D Y+G R KC D F Y + E + G++ GI +N
Sbjct: 421 CVSANSTCLGVNSTDG--YVGYRCKCMDGFHGNPYDANGCEDVDECKKTPGIFKGICHNN 478
Query: 294 ESRGKHDGCLDGIQYFKTS 350
+ CLD +Y T+
Sbjct: 479 IGSYQCMECLDKTEYDVTA 497
>04_04_0344 -
24536516-24537323,24537449-24537567,24539044-24539484,
24540291-24540508,24540641-24540728
Length = 557
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -2
Query: 391 MILFGRTKEPALGLEVLKYWMPSKHPSCLPLDS-LSHCMPYH 269
++LFG + ALGL L+ ++PS HP +++ LS+C H
Sbjct: 93 ILLFGPLEFLALGLLALQAYLPSLHPPPCNIEAELSNCEEVH 134
>01_01_0058 +
440328-440437,440514-440733,441605-441805,441915-441985,
442058-442217,444166-444492,444529-444759,444869-445249,
445573-445648,445736-445799,446334-446469,447666-447710,
447851-447916
Length = 695
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 368 FCSSKQDHPIEDLRGSHKTILWRSGGRNISCSP 466
F SK+D IE L GSH T+L+ GG NIS +P
Sbjct: 454 FIMSKRD--IE-LDGSHPTLLYGYGGFNISLTP 483
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 72 LIFEPAKIMVGAMPVNLLPKF 134
++++PAK VGA+P + PKF
Sbjct: 244 IVYDPAKHSVGALPAMVTPKF 264
>06_03_1167 + 28111923-28113218
Length = 431
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 370 LFVQTRSSHRRLARKP*DNIMEIRRTKH*LLTAEPSSMNGRG 495
+ + R R L+ P D I + R KH L T +P + GRG
Sbjct: 98 MVAKVRPRPRGLSLGPLDVISIVNREKHPLRTKKPPATRGRG 139
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 497 FPLPFIDDGSAVSS*CFVLRISII-LSYGFRASLRWDDLVWTNKR 366
F F GSA S ++ I + +S F LRW ++VW R
Sbjct: 54 FACGFFCAGSATSCDAYIFSIFFVYVSTDFSQRLRWPEIVWFANR 98
>06_01_0476 - 3388176-3389267
Length = 363
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 163 ASMEMIITSILVVV*NVMTISGLLXILVRFRATRDYG 273
A + + +LV++ V+ +SGLL +LVRF R G
Sbjct: 24 ARISPAVVFVLVILAVVLFVSGLLHLLVRFLLRRGRG 60
>04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 261 KGLWYGIQWDNESRGKHDGC--LDGIQYFKTSKPSAGSFVR 377
K W G+QWD +G H L +Y+K P GS +R
Sbjct: 900 KEWWDGLQWDGLEKGHHPSLYELTHSRYYKKKLP-RGSMLR 939
>03_01_0296 + 2284385-2285629,2287632-2288594
Length = 735
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -2
Query: 559 SNFCFWCIFSKPTISMKGAPISLFHSLMMVLR*AANVSSSGSP*YCLMASAQVFDGMILF 380
S +C + +F P + G S+ H+ ++R ++ S C++ + +L
Sbjct: 580 SKYCAYLVFYNPKLLPVGNT-SVRHTCKTLVRHDSSCDRSCGGDDCMIRKGEALAAALLK 638
Query: 379 GR-----TKEPALGLEVLKYW 332
GR +KEP + E+ ++W
Sbjct: 639 GRELNKSSKEPGMWTELAEFW 659
>11_01_0648 + 5254272-5254468,5254491-5254845,5254945-5255292
Length = 299
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 276 GIQWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKIIPSKTC 407
G W N+ R + G +G+ S SA ++P K++P + C
Sbjct: 255 GQGW-NQPRPYYQGETNGVAKEAPSSDSADKEIQPEKVVPQEYC 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,735
Number of Sequences: 37544
Number of extensions: 368571
Number of successful extensions: 899
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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