Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7b10
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0663 + 4975950-4977688,4978183-4978528                           29   2.2  
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    27   6.8  
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    27   9.0  

>07_01_0663 + 4975950-4977688,4978183-4978528
          Length = 694

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +3

Query: 159 GHKVQFGNTLIG----LFKRGW---WEIPEIMGSTGLALVGIGLGIMGMYNYVKNDCENT 317
           GH+ +F NT  G    L +R +   W  PE+  S  + LV +G+ +  M+   ++D +  
Sbjct: 411 GHRGKFANTYGGEVWVLMRRNFTNIWRTPELFLSRLMVLVAMGVLMATMFTKPRDDDQGV 470

Query: 318 EFKKVYFI 341
             +  +F+
Sbjct: 471 TERLSFFV 478


>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 178 VIHSLDYLKEAGGRFLKLWVLQDW 249
           ++HSLD +KE   R L +W+  ++
Sbjct: 508 LVHSLDKIKEPAARSLIIWIFGEY 531


>04_04_0827 -
           28457858-28458028,28458513-28458669,28458984-28459083,
           28459204-28459231,28459321-28459396,28461276-28461355,
           28461642-28461805,28461897-28462056,28462154-28462277,
           28462901-28463941,28464141-28464259,28464512-28464823,
           28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 155 YFWFRCHD*LFFPLLNYIFFLYCKNYCSF 69
           Y   R  D + + LL Y+F   C+ YC+F
Sbjct: 282 YVHLRDADSVHYGLLKYLFVRSCEPYCNF 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,705,830
Number of Sequences: 37544
Number of extensions: 183481
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)