Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7b08
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   3.5  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    26   4.6  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   8.0  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 63  HSIXDNXLTXWKIVYCVK*NVEDTAIKKQHYCHGRKMAVP 182
           H++ D      K+ + ++ N+E  + +++H C+   +AVP
Sbjct: 580 HTVHDKCQKVAKLDHYIRDNIELNSKEREHDCYEGTLAVP 619


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 554 PHXS*YTEIYFDHQPFNRVLKQYQFRYAFYVF 459
           PH       +F H+ F+ +L +Y+ +  FY++
Sbjct: 55  PHLLLRRGAFFSHRDFDMILDRYEQKKPFYLY 86


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 177 VPIKYVRRLYPLASRWNTIKNLH 245
           VP KY ++LY + +  +T++N++
Sbjct: 467 VPYKYAKKLYSILNGGSTLRNVN 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,860
Number of Sequences: 5004
Number of extensions: 43359
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)