Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7b03
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    31   0.11 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    28   0.58 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   1.3  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   2.3  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   3.1  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   4.1  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   4.1  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   4.1  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   4.1  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   5.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   5.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.2  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    24   9.5  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    24   9.5  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    24   9.5  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 322 SMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPNN 188
           S+S  T L  P+   +T S+  + +++  T  +F SSGL SGP N
Sbjct: 548 SVSSETTLVKPS---STSSYIDTTNNVLKTNSSFKSSGLTSGPRN 589


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 219 LNVIQVEAMSLQ--EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 368
           LN IQ   +SL+  +   +   V+ +    HVR++  F +  ++  LV+G+G
Sbjct: 556 LNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 352 RVNV-TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMAST 233
           R NV T ++ N + +   + +PT +T TGS ++  S M +T
Sbjct: 57  RPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNT 97


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 102 LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 248
           L +S ++  +  +  AE     KL+  Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 107 IITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTG 235
           +   V+D+  + K R+P +Q+ R   +     C+ + IKC+ G
Sbjct: 12  LFADVKDLERKKKRRVPPEQRRRVFRAC--KHCRQKKIKCNGG 52


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 135 PEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLPVAV 281
           P+ KA Y  +  LVI     G   KP   +  Q++  ++ E++ LP+ +
Sbjct: 104 PKLKALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVL 152


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 385 PIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTAT 272
           P + +   P +RVNVT ASG+     T       N +T
Sbjct: 240 PTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNAST 277


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 173 ELVAAWVFCFCLWIP 129
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 173 ELVAAWVFCFCLWIP 129
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 444 LLPFPPYLQILQAEHQGDGVQLSVLAPNPEQE*M*QAHLGIQ 319
           L P PP LQ+ +   Q D  + S   P+P  E M +++  I+
Sbjct: 622 LPPEPPTLQVDRTPQQPDPQETSESLPSPNTEEMGESYNDIR 663


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 340 TGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASGPNNA*RMTSLLL 161
           T  S ++++  +   S  FNT +G  T+S S   S    + SSG ++    +  +TS ++
Sbjct: 700 TPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSII 759


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 343 VTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSS 212
           +TG S + ++  T +   + N  + +FT+S S   S+  T  SS
Sbjct: 625 ITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSS 668


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 346  NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSS 212
            ++TG+  +S++  +   SPT +    S T+S    AS+ I   +S
Sbjct: 1073 SITGSLSSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAAS 1117


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 318 IEFPDAPVTFTLVQGSGP 371
           IEFPD P TF  ++ + P
Sbjct: 37  IEFPDGPATFVRLKCTNP 54


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +3

Query: 186 ALLGPDAKPD----ELNVIQVEAMSLQEAVKLPV 275
           ++L PD +PD    ++  + V+   ++EAV+LP+
Sbjct: 121 SMLRPDERPDVSYADVGGLDVQKQEVREAVELPL 154


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 337 GASGNSMSRRTCLDSPTFNTATG 269
           G S  SMS  T +DS  FN A+G
Sbjct: 435 GLSKPSMSSDTMIDSRLFNQASG 457


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 245 HGFHLYHI*FIWFGIW 198
           H FHLYH  + W G W
Sbjct: 520 HSFHLYHWWWTW-GAW 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,758
Number of Sequences: 5004
Number of extensions: 32923
Number of successful extensions: 93
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)