Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a21
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    31   0.16 
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    29   0.84 
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   1.9  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   3.4  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   4.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.8  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 599 GHIIIQCLEPIPTAGLTTDDIGKLSDRIHESMSSTYEKLWD 477
           G  +I+ L+PIPT G T +D+  L      +M++   ++ D
Sbjct: 232 GEALIKVLDPIPTEGKTAEDVNDLLHETETAMNNALVEIDD 272


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 196 DRRNIPDIDNSNLYQHHYQESHRWCTEIYQLEN*EDIRTEL*DHLK 59
           DR   PD +   L  H Y E      ++ ++E+   ++T++ D LK
Sbjct: 307 DRSRYPDFNARKLVYHAYVEQSAVINDLLEIEDASLLKTDISDELK 352


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 450 YAILIASAYKEINLLFNYYSDSLSHKQPVNRRTYI 346
           Y  +  SA   I + + +Y+D++ H +PVNR  ++
Sbjct: 143 YPNMYVSANTFIPMPYAHYTDNMYHAKPVNRPNFL 177


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 212 TICIYILGPAGNLALKREENLENHQ 286
           +IC +I    GN AL R+    NH+
Sbjct: 339 SICFFIYAAVGNRALTRKNGTSNHR 363


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 554 LTTDDIGKLSDRIHESMSSTYEKLWDEIMTKNK*NTLF 441
           ++ DD+ K+ D   E++ +    LWD++    K  TLF
Sbjct: 47  MSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQK-ETLF 83


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 314  IFKTFPNGVVGGFQGFLPVLALGFR 240
            I +TFP   VG +QG   ++  GFR
Sbjct: 1695 IMETFPQNWVGDYQGLQILILKGFR 1719


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 429 AYKEINLLFNYYSDSLSHKQPVNRRT 352
           ++ ++    +Y+ D LSHK   NR+T
Sbjct: 25  SHSDLEWTLSYFHDELSHKFLANRKT 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,393
Number of Sequences: 5004
Number of extensions: 52501
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)