Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a18
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    28   1.1  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    27   1.9  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   1.9  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   3.4  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   4.5  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   7.8  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/90 (23%), Positives = 40/90 (44%)
 Frame = +1

Query: 172 ELIKLVGELKQNLKALQLENDVLERVLTRLDPSLLQGIQQAIEYASKFQSYSSMNVGSFV 351
           EL K  GE +++    +     +         +    IQ  + + S FQS S+ +V SF+
Sbjct: 357 ELTKSNGETEKDDGRRRALTKAIHSCAINFPHTAATAIQYLLSHISDFQSKSASSVLSFI 416

Query: 352 KSQTSKFGFESLASPSRMLTSPSKVSTRRI 441
           K    KF     ++ +++L S  ++   +I
Sbjct: 417 KEVMEKFPDLRSSNITKLLLSLKELRAGKI 446


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 628 VNDIVKSYELFDKQVIVEGW 687
           + D+  SYE+F K+ ++E W
Sbjct: 237 IQDLTSSYEIFQKRRVIEEW 256


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 282 ALQQGRVQPRQDPFEYVVFELQRL 211
           A+ QGR  PRQDP E  V  L+RL
Sbjct: 172 AIAQGRKAPRQDPDESDVDVLRRL 195


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 280 GIQQAIEYASKFQS-YSSMNVGSFVKSQTSKFGFESLASPSRMLTSPSKVSTRRIDS 447
           GIQ++IE   +FQS  +S  VG+     +SKF   +L  P  ++  PS  S+ + DS
Sbjct: 126 GIQRSIEIKLRFQSLQNSFEVGTPETHTSSKFLSSTL--PPSLIFDPS--SSEKSDS 178


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 67  QHLTSPRSKVKMSQGVHRSSISATSGSHYDELS 165
           Q +T P S V   Q  H+ SIS+T  S  DE+S
Sbjct: 235 QGVTQP-SLVNTEQLSHQQSISSTKSSKLDEIS 266


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 524 ETNSDLSNTLTRGP-VPKMTVPPTLADESIRLVETFEGLVSILDGLARDSNPNLEV 360
           ET S+++      P VPK+     L  + +   +++E LVS +D + R  +  LE+
Sbjct: 234 ETPSNVTPKKKPSPEVPKLPDNRELTVKQVENYDSWEDLVSSIDTIERKDDGTLEI 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,531
Number of Sequences: 5004
Number of extensions: 55576
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)