Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a18
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    32   0.45 
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    30   1.4  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    30   1.4  
Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   5.5  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   7.3  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    28   7.3  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    28   7.3  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical p...    27   9.7  
AF039040-3|AAB94183.1|  370|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 24/62 (38%), Positives = 31/62 (50%)
 Frame = +3

Query: 198 ETEPQGVATRKRRTRKGPDEAGPFPAAGHPTGHRIREQISELLLDERGQFRQIANFQIRV 377
           +T P G A  K   R  P E GP   +G     R + Q+ E LL+ + QF+Q A   I V
Sbjct: 417 QTAP-GQAAPKLHQRPPPQEVGPLAPSGVEGKSRNQGQL-EFLLERQAQFKQAA---IHV 471

Query: 378 RV 383
           RV
Sbjct: 472 RV 473


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 369 FGSLRFDETAHVHRGVALKFARVFDGLLDALQQGRVQP-RQDP 244
           F  L+FDE  ++ R   ++    F GLL+A  Q R  P RQ P
Sbjct: 869 FTQLQFDERTYLARFTDIECFMPFSGLLEAKDQPRPMPIRQQP 911


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 369 FGSLRFDETAHVHRGVALKFARVFDGLLDALQQGRVQP-RQDP 244
           F  L+FDE  ++ R   ++    F GLL+A  Q R  P RQ P
Sbjct: 869 FTQLQFDERTYLARFTDIECFMPFSGLLEAKDQPRPMPIRQQP 911


>Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical
           protein F22D6.5 protein.
          Length = 775

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
 Frame = +3

Query: 399 QDAHQPFESFDQANRLICQGRRD---------GHLRHGTTSQRVREIGISFHRNGDRDTE 551
           +DA +   S  +  RLI + R D         G+ R   T +R R       R+G R+  
Sbjct: 135 RDAERRDRSLSKERRLIQRKREDNRRDPRAHEGNRRRDRTPERFRNNRDRRDRDGRREDR 194

Query: 552 SRESPEQGR*ATRFIKSSIRRDRPK 626
            R SP++ R + R  +   R+D  K
Sbjct: 195 HRRSPDRRRDSDRKREDGKRKDESK 219


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +1

Query: 304  ASKFQSYSSMNVGSFVKSQTSKFGFESLASPSRMLTSPSKVSTRRIDSSARVGGTV 471
            AS  Q   S + GS   S  +     S ASP+   T+PS   T    SS  VG T+
Sbjct: 1483 ASSTQPQMSTSQGSSAGSTVAS----STASPAASSTAPSSTGTMSSTSSGTVGSTI 1534


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 115 HRSSISATSGSHYDELSDTELIKLVGELKQNLKALQLEN 231
           H  +   ++ S        E++KL  ELK+N+  LQ EN
Sbjct: 538 HLEASQESAASQEQREESQEIVKLNEELKENISTLQREN 576


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
 Frame = +1

Query: 91   KVKMSQGVHRSSISATSGSHYDELSDTELI-KLVGELKQNLKALQLENDVLER---VLTR 258
            KVK+SQ    S IS+ S S Y  +     + K V ELK++      E  ++ER    L R
Sbjct: 2223 KVKLSQR-KPSRISSASDSEYCPIVKFPKVQKRVVELKEDHPTNNSELGIIERKKKELKR 2281

Query: 259  LDPSLLQGIQQAIEYASKFQSYSSMNVGSFVKSQTSKFGFESLASPSRMLTSPSKVSTRR 438
             DP        A+  +S   +      GSFVK + S  G  +L       T  + VS +R
Sbjct: 2282 EDP-------PAVLMSSTRSTLKRPETGSFVKREIS-VGKPALPKADVQKTLET-VSLKR 2332

Query: 439  IDS 447
            IDS
Sbjct: 2333 IDS 2335


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 148  HYDELSDTELIKLVGELKQNLKALQLENDVLERVLTRLDPSLLQ 279
            H DEL + ++ ++    K+ L+ L+ E D LER +  L+  L Q
Sbjct: 1070 HDDELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQ 1113


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 148  HYDELSDTELIKLVGELKQNLKALQLENDVLERVLTRLDPSLLQ 279
            H DEL + ++ ++    K+ L+ L+ E D LER +  L+  L Q
Sbjct: 1143 HDDELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQ 1186


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 148  HYDELSDTELIKLVGELKQNLKALQLENDVLERVLTRLDPSLLQ 279
            H DEL + ++ ++    K+ L+ L+ E D LER +  L+  L Q
Sbjct: 1143 HDDELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQ 1186


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +1

Query: 154 DELSDTELIKLVGELKQNLKALQLENDVLERVLTRLDPSLLQGIQQAIEYASKFQSYSSM 333
           DEL+    +KLVG     +  L LE D++  +   LD +    I   + Y      Y+  
Sbjct: 218 DELNRNITVKLVGRQYSQILDLNLETDMIHGMNYTLDVAFKSAINLNLAYGLFAAPYTFE 277

Query: 334 NVGSFV 351
           N   +V
Sbjct: 278 NETRYV 283


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical protein
            D2013.5 protein.
          Length = 934

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 127  ISATSGSHYDELSDTELIKLVGELKQNLKALQLENDVLERVLTRLDPSLLQGIQQAIEYA 306
            ++ T  +   ++++TE  +L  E+K+ L     E D+ ++ LT     L + IQQ     
Sbjct: 860  VNLTCNALRQQITNTEHRRLEKEIKEVLDDWSQEPDIKKKYLTGRRVDLAEEIQQVRRIQ 919

Query: 307  SKFQSY 324
             K + +
Sbjct: 920  EKLEEF 925


>Z36753-13|CAA85331.1|  598|Caenorhabditis elegans Hypothetical
           protein T09A5.2a protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
 Frame = +1

Query: 169 TELIKLVGELKQNLKALQLENDVLERVL---TRLDPSLLQGIQQAIEYASKFQSYSSMNV 339
           +EL  +V  L+QN K +   N  L R+L      D   L  +  + +  S  +S SS+N 
Sbjct: 499 SELGNVVLALRQNQKHIPFRNCQLTRILEDSLNGDSKTLVIVHLSPDAKSLNESISSVNF 558

Query: 340 GSFVKSQTSKFGFESLASPSRMLTSPSKVSTRRIDSSAR 456
              +    +K G        R +T  S    R I +S R
Sbjct: 559 AEKIGQVFTKSGTMKREPTRRSMTGISSGQRREIPASPR 597


>AF039040-3|AAB94183.1|  370|Caenorhabditis elegans Hypothetical
           protein T22B11.3 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
 Frame = +1

Query: 112 VHRSSISATSGSHYD----------ELSDTELIKLVGELKQNLKALQLENDV 237
           +HR+  S+ +GS +D           LSD EL+KL   LK N+ A   +N V
Sbjct: 78  IHRAMFSSFNGSVHDVNVYLLKNIARLSDEELVKLTSLLKSNIAAGAHQNVV 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.130    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,327,385
Number of Sequences: 27780
Number of extensions: 322586
Number of successful extensions: 1062
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)