Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a16
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.1  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.0  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   8.7  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 126 QCIITWMRNLICCKKFAQKEQSKYFLQVHNA 34
           QCI TWM  +        ++  KYFLQ+  A
Sbjct: 230 QCIDTWMTTMKASCPLCNEDYYKYFLQMDAA 260


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -1

Query: 210 SFVQMNPQNS*PRKRGCLS*VSFV*LSIQCIITWMRNLICCKKFAQKEQSKY 55
           SF   NP  +    R     +  +   I+ +  W R + C K ++QK+ + Y
Sbjct: 400 SFTNANPTTAPIVSRNAQDNMGMLAYMIRMVSIWGRVVRCLKSYSQKQSNPY 451


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 618 AFRRLERTEALSLWFRCKQQERLRLGERDGAGLEFKRKNG 737
           A  ++++ E  + WF  KQQ R+ L E+     E  R +G
Sbjct: 515 AKEKIQKEEEYNKWFARKQQARVELEEQRRKKKEQDRLSG 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,146
Number of Sequences: 5004
Number of extensions: 69922
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)