Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a16
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261...    31   0.74 
02_01_0028 - 172243-172435,172550-172701,172801-173341,173640-17...    30   2.2  
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    29   3.0  
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367...    29   5.2  
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200...    29   5.2  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    28   6.9  

>05_01_0333 -
           2614123-2614202,2614466-2614553,2614644-2614721,
           2614795-2614887,2614982-2615101,2615685-2615726,
           2615822-2616091,2617188-2617339,2617771-2618233
          Length = 461

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 469 PICIPGYSFNAS--NQLYAAGYTDENMFLEKTLHKLQYVNKDIC 594
           P+ IP ++FN +   Q++  G  DEN+ L  +  K+QY N  +C
Sbjct: 239 PVQIPNFTFNLNYAQQIFVLG-RDENLCLSISHGKVQYCNPFLC 281


>02_01_0028 -
           172243-172435,172550-172701,172801-173341,173640-173824
          Length = 356

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 372 LDLGIPRLIV*SYEHSFAVLFQNILRYSADVVSVSQCIFFFDVNKTCDSYFYFVSFVQMN 193
           L+ G+ RL++ +     A LF + + Y  +   +SQ  FF+ +  T  +  Y ++F  ++
Sbjct: 32  LEQGLNRLVLITLRQLVATLFLSPIAYFKERAGLSQYSFFYGLQYTTAT--YAITFANLS 89

Query: 192 P 190
           P
Sbjct: 90  P 90


>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = +1

Query: 184 VLRVHLHEGDKIKIAVTGLVYIKEKYALGNADDIGRIPQYILKQDSKAMFIASDNKPWYA 363
           VL +      K K  V G + +    +      I  +P ++   + + +  A DN+PW +
Sbjct: 95  VLHIRYSVPAKPKAPVGGSLPVATSASELGVPGIYLVPDFVTAAEEQELLAAVDNRPWKS 154

Query: 364 KIKDYMTHPEYEY 402
             K  + H  +E+
Sbjct: 155 LAKRRVQHYGFEF 167


>03_01_0480 -
           3676529-3676687,3676767-3676931,3677044-3677220,
           3678170-3678273,3678700-3678843,3679831-3679898,
           3680059-3680162,3680759-3680767,3681572-3681657,
           3681918-3683373
          Length = 823

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 527 TPMKTCFWRKHYTNCNM 577
           TPMKT +W K+  +CNM
Sbjct: 661 TPMKTKWWEKNMKSCNM 677


>02_04_0589 -
           24117688-24119282,24119881-24119908,24120004-24120089,
           24120196-24120220,24121188-24121326,24122344-24122567,
           24122674-24122691
          Length = 704

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 589 YLCLHIAVCVMFS-PKTCFHRCSRRHKVDLKR*KNIRECRSAVG 461
           +L +HI + +M S P+ CF R   +  VDL R  N +  ++ +G
Sbjct: 570 FLGMHILIALMRSDPRECFWRAVLQSLVDLCRSSNSKRIKADMG 613


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 607 CRIHRIYLCLHIA-VCVMFSP 548
           C +H + LC+H+A +CV  SP
Sbjct: 779 CLLHEVLLCIHVALLCVQESP 799


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,899,318
Number of Sequences: 37544
Number of extensions: 411061
Number of successful extensions: 988
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)