Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a16
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   1.1  
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    31   1.1  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      31   1.1  
AF039710-2|AAB96690.1|  419|Caenorhabditis elegans Hypothetical ...    30   2.0  
U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect...    29   2.6  
U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect...    29   2.6  
U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.        29   2.6  
U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine rec...    29   3.5  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 547 LEKTLHKLQYVNKDICDEFYNRAKLSEGLKEPKHYLC--GFAVNNKKDCVWENGMVLASN 720
           + KTLH+L  +     DE    A+    L+ PKH+ C   F V+ ++       +++ SN
Sbjct: 69  MTKTLHRLFELTDSDVDEIREMAQKLAELQHPKHFYCFIRFLVDEQETTTVSKELMIKSN 128


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
           protein.
          Length = 1173

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
 Frame = +1

Query: 301 YILKQDSKAMFIASDNKPWYAKIKDYMTHPEYEYATMNTIAVLEFDMEDENHIYLPPICI 480
           Y +K  +K   I   +  ++ + +D M H   E+     I  L++  +D  H+Y+    +
Sbjct: 94  YAMKMLNKDDMIKRADSAFFWEERDIMAHANSEW-----IVRLQYAFQDPRHLYMVMEYM 148

Query: 481 PG-------YSFNASNQLYAAGYTDENMFLEKTLHKLQYVNKDI 591
           PG        S+  S + +   YT E +     LH + Y+++D+
Sbjct: 149 PGGDLVNLMTSYEVSEK-WTRFYTAEIVEALAALHSMGYIHRDV 191


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
 Frame = +1

Query: 301 YILKQDSKAMFIASDNKPWYAKIKDYMTHPEYEYATMNTIAVLEFDMEDENHIYLPPICI 480
           Y +K  +K   I   +  ++ + +D M H   E+     I  L++  +D  H+Y+    +
Sbjct: 94  YAMKMLNKDDMIKRADSAFFWEERDIMAHANSEW-----IVRLQYAFQDPRHLYMVMEYM 148

Query: 481 PG-------YSFNASNQLYAAGYTDENMFLEKTLHKLQYVNKDI 591
           PG        S+  S + +   YT E +     LH + Y+++D+
Sbjct: 149 PGGDLVNLMTSYEVSEK-WTRFYTAEIVEALAALHSMGYIHRDV 191


>AF039710-2|AAB96690.1|  419|Caenorhabditis elegans Hypothetical
           protein C46E10.5 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
 Frame = +1

Query: 388 PEYEYATMNTIAVLE------FDMEDENHIYLP 468
           PEYEYA  N + V++      FDM D +H++ P
Sbjct: 91  PEYEYAEYNRLLVMDLGPPSLFDMNDLHHLWRP 123


>U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform b protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 322 KAMFIASDNKPWYAKIKDYMTHPEYEYATMNTIAVLEFDMEDENH 456
           + + +  + KP Y KI      PE E A MN +  LEF + D N+
Sbjct: 302 RIILLDREEKPAYLKIFGKADEPELENAWMNNVKHLEF-ISDTNY 345


>U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform a protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 322 KAMFIASDNKPWYAKIKDYMTHPEYEYATMNTIAVLEFDMEDENH 456
           + + +  + KP Y KI      PE E A MN +  LEF + D N+
Sbjct: 302 RIILLDREEKPAYLKIFGKADEPELENAWMNNVKHLEF-ISDTNY 345


>U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 322 KAMFIASDNKPWYAKIKDYMTHPEYEYATMNTIAVLEFDMEDENH 456
           + + +  + KP Y KI      PE E A MN +  LEF + D N+
Sbjct: 302 RIILLDREEKPAYLKIFGKADEPELENAWMNNVKHLEF-ISDTNY 345


>U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 8 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 355 WYAKIKDYMTHPEYE-YATMNTIAVLEFDMEDENHIYLPPICIPGYSFNASN 507
           W    K Y  HP +  Y+ +  I VL         +Y+P +C+P   F  SN
Sbjct: 49  WVQHKKSYGYHPFFMVYSMVGLILVLLDIFITRLFVYVPQLCLPAAQFFISN 100


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 439  MEDENHIYLPPICIPGYSFNASNQLY 516
            ++DE HI LPP+C+ G  ++   + Y
Sbjct: 1621 IKDERHI-LPPVCLAGQKYSFDGEFY 1645


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
            F46H5.4 protein.
          Length = 2018

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 412  NTIAVLEFDMEDENHIYLP---PICIPGYSFNASNQLYAAGYTDENMFLEKTLHKLQYVN 582
            N IAV       + HI LP   PI + G S NAS+Q+    +  +  FL K    +   N
Sbjct: 1353 NIIAVATDPKNAQFHI-LPMIFPIIMHGLSCNASDQVLEVIFAAQQNFLAKFPDMILEQN 1411

Query: 583  KDICDE 600
             ++C E
Sbjct: 1412 PELCAE 1417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,798,188
Number of Sequences: 27780
Number of extensions: 394927
Number of successful extensions: 1014
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)