Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a16
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 451  NHIYLPPICIPGYSFNASNQLYAAGYTDEN 540
            NH Y   + +PG +  A+N   ++G ++++
Sbjct: 1297 NHAYRDAVTVPGNNLIATNTTVSSGSSEDH 1326


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 202 ANEPSKLLATETWLSLLSFLRVTEYSMYHHMDAKSDLLQEIRSERTK 62
           A    ++L     LSL+  LR++    Y     +  +LQ ++ +RT+
Sbjct: 201 AGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYILQNLQKKRTR 247


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 216 NKNSCHRSCLHQRKICIGKR*RHRQNTS 299
           +K+ C R  L QRKI   +  R+ +  S
Sbjct: 2   DKDECDRKSLSQRKIIRSRSRRYSKRFS 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,403
Number of Sequences: 438
Number of extensions: 4979
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)