Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7a12
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0366 - 17232010-17232061,17232546-17232601,17232692-172327... 42 4e-04
11_08_0073 - 28155156-28155296,28155422-28155682,28155858-281559... 38 0.004
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 37 0.008
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765... 37 0.008
03_05_0445 - 24401899-24401992,24402098-24402162,24402262-244022... 36 0.015
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 32 0.31
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 30 0.96
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190... 28 5.1
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 28 5.1
02_03_0131 - 15576422-15577021 28 5.1
06_02_0214 + 13141213-13143741 27 6.8
01_06_1836 + 40228508-40230448 27 6.8
12_01_0206 + 1555278-1555448,1555710-1555772,1556236-1556307,155... 27 8.9
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458... 27 8.9
>10_08_0366 -
17232010-17232061,17232546-17232601,17232692-17232727,
17232861-17232941,17233060-17233131,17233394-17233465,
17233555-17233659,17233754-17233804,17234075-17234109,
17234692-17234736,17234940-17234973
Length = 212
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 127 MNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLL 255
MN F+K PT +E R + R+L A R +ERD L+ EEK+L+
Sbjct: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLV 43
>11_08_0073 -
28155156-28155296,28155422-28155682,28155858-28155962,
28156563-28156693,28156905-28156941
Length = 224
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 MNF-FSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLL 255
M+F F K T E+ R+N R L K+ R++ER++ L+ +EKKL+
Sbjct: 1 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLI 44
>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 37.1 bits (82), Expect = 0.008
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +1
Query: 157 KEIQRQNDRDLRKAGRDLERDKANLEREEK 246
+E ++QN+R++RKA +LER++ ERE+K
Sbjct: 1045 REQKKQNEREMRKAAAELERERVKQEREQK 1074
>07_01_0908 +
7653813-7653849,7655220-7655350,7655946-7656020,
7657007-7657111,7657648-7657911,7658474-7658614
Length = 250
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 MNF-FSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLL 255
M+F F K T E+ R+N R L ++ R++ER++ L+ +EKKL+
Sbjct: 1 MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLI 44
>03_05_0445 -
24401899-24401992,24402098-24402162,24402262-24402297,
24402419-24402499,24403084-24403155,24403265-24403336,
24403628-24403678,24404374-24404408,24404615-24404659,
24405067-24405100
Length = 194
Score = 36.3 bits (80), Expect = 0.015
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 127 MNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLL 255
MN F K KE R + R++ A R +ER+ +L+ EEKKL+
Sbjct: 1 MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLV 43
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 160 EIQRQNDRDLRKAGRDLERDKANLEREEKK 249
E ++QN+R++RKA LER++ E+E K+
Sbjct: 1339 EEKKQNEREMRKAAAKLERERLKQEKELKQ 1368
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 30.3 bits (65), Expect = 0.96
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 19 RNEFLIYFTLCTFLFKFHFRNKISKKIPKLY-TKETMMNFFSKAPTVKEI 165
RN F++ + L + F + +S +I KLY T+E + + FS P+ K +
Sbjct: 106 RNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPV 155
>11_03_0184 +
11317787-11318198,11318337-11318671,11318756-11319048,
11319125-11319483,11319549-11319748,11319823-11320012,
11320084-11320188,11320262-11320338,11320428-11320649
Length = 730
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +1
Query: 64 KFHFRNK-----ISKKIPKLYTKETMMNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKAN 228
+ H RN+ + + +P L T E N + VKE+ R+N+ DLR +L+
Sbjct: 534 RIHLRNEAKTATLERLVPHLGTLEATRNQLHE---VKELARKNEHDLRDRIAELQESNFE 590
Query: 229 LEREEK 246
L K
Sbjct: 591 LSGSSK 596
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +1
Query: 64 KFHFRNK-----ISKKIPKLYTKETMMNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKAN 228
+ H RN+ + + +P L T E N +A KE+ R+N+ DLR +L+
Sbjct: 167 RIHLRNEAKTVTLERLVPHLGTLEATRNQLHEA---KELARKNEHDLRDRIAELQESNFE 223
Query: 229 LEREEK 246
L K
Sbjct: 224 LSGSSK 229
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 157 KEIQRQNDRDLRKAGRDLERDK-ANLEREEKK 249
+E+ R DRD R RD ERD+ + +RE ++
Sbjct: 26 RELDRPRDRDHRDRDRDKERDRDRDRDRERRR 57
>06_02_0214 + 13141213-13143741
Length = 842
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 52 TFLFKFHFRNKISKKIPKLYTKETMMNFFSKAPTVKEIQRQN 177
++L +FHF + +SK + +LY + +F+++ IQ N
Sbjct: 306 SYLIRFHFCDIVSKALNQLYFNAYVGSFYAQHDIDLSIQSMN 347
>01_06_1836 + 40228508-40230448
Length = 646
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 49 CTFLFKFHFRNKISKKIPKLYTKETMMNFFSKAPTVKEIQRQNDRDLR 192
C + H + KI +K KLY E + N F + +Q+ D +L+
Sbjct: 460 CVLILITHLQAKIEEK-SKLYEDEALQNIFLMNNLLYIVQKVKDSELK 506
>12_01_0206 +
1555278-1555448,1555710-1555772,1556236-1556307,
1556430-1556537,1556644-1556724,1556861-1556914,
1557020-1557145,1557228-1557317,1557603-1557725,
1557831-1557938,1558287-1558400,1558530-1558586,
1558667-1558741,1558915-1558989
Length = 438
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 109 YTKETMMNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLLKPGPAGVAT 282
+ +ET F SK P KEI R+ + + G D+++ L E+ K + G VAT
Sbjct: 334 FKRET--RFTSKCPP-KEIVRKIEEAAKPLGFDVQKKNYKLRLEKVKAGRKGNLNVAT 388
>09_06_0067 -
20645012-20645095,20645365-20645466,20645583-20645828,
20646042-20646236,20646343-20646636,20646952-20647134,
20647534-20647593,20647796-20648002,20648081-20648282,
20648367-20648494,20648759-20648842,20648955-20649134,
20649281-20649372,20649620-20649789,20650226-20650337,
20650451-20650554,20651262-20651371
Length = 850
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +1
Query: 82 KISKKIPKLYTKETMMNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLLK 258
K+ + P + T + ++ P K + + + DLR A L+RD L + ++++++
Sbjct: 331 KMQPQQPGYSSSRTYLELLAELPWQK-VSEERELDLRAAKESLDRDHYGLTKVKQRIIE 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,109,660
Number of Sequences: 37544
Number of extensions: 151814
Number of successful extensions: 443
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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