Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7a12
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 29 1.5
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 29 1.5
Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical p... 29 2.6
Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical pr... 28 4.6
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 27 6.0
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +1
Query: 127 MNFFSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKL 252
MN FSK P KE++R N R+LRK RDLE D+ ++R EK+L
Sbjct: 1 MNIFSK-PDPKELERANKRELRKTNRDLESDRRQMDRREKEL 41
>AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical
protein Y46G5A.12 protein.
Length = 237
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +1
Query: 127 MNF-FSKAPTVKEIQRQNDRDLRKAGRDLERDKANLEREEKKLL 255
M+F F + T E+ RQN R L KA R+L+R++A +E +EKK++
Sbjct: 1 MDFLFGRRKTPAELLRQNQRALNKAIRELDRERARMEAQEKKVI 44
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 166 QRQNDRDLRKAGRDLERDKANLEREEKK 249
+R NDRD R RD ++D+ + ++EKK
Sbjct: 415 RRSNDRDGRGDRRDRDKDRGDRRKDEKK 442
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 166 QRQNDRDLRKAGRDLERDKANLEREEKK 249
+R NDRD R RD ++D+ + ++EKK
Sbjct: 415 RRSNDRDGRGDRRDRDKDRGDRRKDEKK 442
>Z74042-14|CAE11313.1| 311|Caenorhabditis elegans Hypothetical
protein T11F9.18 protein.
Length = 311
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 198 SLS*ITVILPLNFLHGWSFTKKIHHSFLCIQFWNFFANFV 79
SLS T+ L NFLH +H F+ I FF +F+
Sbjct: 226 SLSQRTISLQRNFLHSLYIQTAVHVIFISIPLGIFFLSFI 265
>Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 160 EIQRQNDRDLRKAGRDLERDKANLEREEKKLL 255
E+Q++ + +LRK + LE +K +E+ K+ L
Sbjct: 310 EVQKKMEEELRKKEKQLEEEKQQMEQRLKEQL 341
>Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 160 EIQRQNDRDLRKAGRDLERDKANLEREEKKLL 255
E+Q++ + +LRK + LE +K +E+ K+ L
Sbjct: 310 EVQKKMEEELRKKEKQLEEEKQQMEQRLKEQL 341
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 160 EIQRQNDRDLRKAGRDLERDKANLEREEKK 249
E++RQ + + K R+ +++ NL++EEKK
Sbjct: 113 ELERQVEMEADKLEREHRKNQKNLKKEEKK 142
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 133 FFSKAPTVKEIQRQNDR 183
FF PTVK++QRQN +
Sbjct: 325 FFFVGPTVKDVQRQNSK 341
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 133 FFSKAPTVKEIQRQNDR 183
FF PTVK++QRQN +
Sbjct: 339 FFFVGPTVKDVQRQNSK 355
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 181 RDLRKAGRDLERDKANLEREEKK 249
+ +K G+D E D+A ERE KK
Sbjct: 302 KQTKKKGKDSEEDQAKKERETKK 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,398,061
Number of Sequences: 27780
Number of extensions: 153709
Number of successful extensions: 488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -