Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a11
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0207 + 1528951-1529499                                           34   0.096
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571...    31   1.2  
11_02_0117 + 8480350-8480424,8480958-8481223,8481254-8481374,848...    29   4.8  

>07_01_0207 + 1528951-1529499
          Length = 182

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 23/104 (22%), Positives = 44/104 (42%)
 Frame = +2

Query: 173 GDQCDAYDKTVLLTSAEIFQIVSRINERRNFVAMGLANFLPQAADMKEIIWSQELANFAQ 352
           G  C  +   V++T+  +    S   E      + L N +     ++E+ W   +A +A+
Sbjct: 8   GAACQCF--AVVVTAIVLMAATSAAGEDTAQDFVDLHNAVRDEVGVEEVTWDDTVAAYAE 65

Query: 353 RWVDQCDQNIQPDKEDICRDLVNAKVGQNIATILGTTTGLNVKS 484
            +  QC  + QP    +  +   A  G+NI  ++G   G +  S
Sbjct: 66  SYAAQCQADCQP----VSTNNGTATYGENIYVVVGPAGGNDTSS 105


>02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,
            5710542-5710661,5711321-5711421,5711618-5711743,
            5713504-5713596,5713694-5713816,5713889-5714032,
            5714539-5714672,5714893-5715002,5715315-5715430,
            5716438-5716572,5716650-5716820,5717545-5717709,
            5718165-5718242,5718313-5718445,5718551-5718741,
            5718842-5718914,5719001-5719056,5719142-5719300,
            5719383-5719496,5719562-5719654,5720544-5720726,
            5720801-5720878,5720966-5721052,5721135-5721216,
            5721288-5721400,5721486-5721636,5721759-5721877,
            5721966-5722163,5722377-5722442,5723837-5723957,
            5724224-5724343,5724412-5724542,5725210-5725341,
            5725418-5725519,5726231-5726437,5726510-5726626,
            5727468-5727623,5727721-5727810,5728624-5728848,
            5728969-5729091,5729202-5729284,5729459-5729618,
            5730264-5730374,5730652-5730751,5731375-5731454,
            5731752-5731847,5731961-5732110
          Length = 1991

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 461  TTGLNVKSFVDMWFMPILTYKGNVAYYNECPW 556
            T+ ++   F++ W+  IL Y G  +   +CPW
Sbjct: 1573 TSLVDSADFLEAWYYEILAYGGTTSARTDCPW 1604


>11_02_0117 +
           8480350-8480424,8480958-8481223,8481254-8481374,
           8481463-8481726,8482210-8482581
          Length = 365

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +2

Query: 251 ERRNFVAMGLANFLPQAADMKEIIWSQELANFAQRWVDQCDQNIQPDKEDICRDLVNAKV 430
           E+    +  +  + P   ++K+++W   L + +   + + D N   D E I         
Sbjct: 246 EKEKLDSFNIPIYCPSVDELKQLVWQNNLLDISDIQLLEMDGNPMDDLEPIEGTAATQAT 305

Query: 431 GQNI-ATILGTTTGLNVKSFVD 493
           GQ++ AT+      L    F D
Sbjct: 306 GQSMSATLRAAIESLIASHFGD 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,853,268
Number of Sequences: 37544
Number of extensions: 349498
Number of successful extensions: 710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)