Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a10
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    65   7e-12
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    64   2e-11
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    59   4e-10
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    59   5e-10
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    40   2e-04
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    37   0.002
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   2.3  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   3.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   4.0  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    25   9.3  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   9.3  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 45/141 (31%), Positives = 63/141 (44%)
 Frame = +2

Query: 5   LFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRR 184
           LF +  P+T + F  L  G+  G GY G+ F   +P     GGD+   +G G  +  G R
Sbjct: 47  LFGKTVPKTAENFRALATGEK-GFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSR 105

Query: 185 TPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVILPCETFE 364
            P   EN+  SH  PGLLSM     D     F IT    P  D  +VVFG V+   +  +
Sbjct: 106 FP--DENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVK 163

Query: 365 VIRGLGAPLSSRPVVEISAAK 427
            I         +P+ ++   K
Sbjct: 164 KISKAETDNRDKPLEDVKIIK 184


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 42/127 (33%), Positives = 59/127 (46%)
 Frame = +2

Query: 5   LFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRR 184
           LF +  P+T   F  L  G+  G+GY G+ F   +P     GGD    NG G  +  G +
Sbjct: 22  LFDDVVPKTAANFRALCTGEK-GYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEK 80

Query: 185 TPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVILPCETFE 364
            P   EN+   H+ PGLLSM     +     F IT    P  D ++VVFG V    +  +
Sbjct: 81  FP--DENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVK 138

Query: 365 VIRGLGA 385
            +  LG+
Sbjct: 139 KVESLGS 145


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 46/140 (32%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
 Frame = +2

Query: 5   LFAECCPQTCKLFIDLLQG---DGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQR 175
           LF    P+T K F  L  G   DG    Y G++F   +      GGD    NG G  +  
Sbjct: 23  LFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIY 82

Query: 176 GRRTPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVILPCE 355
           G +     EN+   H  P LLSM     +     F IT  P P  D ++VVFG+VI    
Sbjct: 83  GEK--FEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKS 140

Query: 356 TFEVIRGLGAPLSSRPVVEI 415
           T   I  L    +  PVV +
Sbjct: 141 TVRTIENLETK-NDDPVVPV 159


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 58.8 bits (136), Expect = 5e-10
 Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
 Frame = +2

Query: 5   LFAECCPQTCKLFIDLLQGDGLGH-----GYVGTKFFTKVPGLYWSGGDVIHDNGFGCYA 169
           LF+   P+T + F     G+ LG      GY  + F   + G    GGD +  +G G   
Sbjct: 25  LFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSAT 84

Query: 170 QRGRRTPIGAENYHYSHSLPGLLSM-RVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVIL 346
               RT    EN+   H  PGLLSM    KD   C  F IT  P    D ++VVFG VI 
Sbjct: 85  IFNSRT-FPDENFTLKHDRPGLLSMANAGKDSNGCQFF-ITTVPCDFLDGKHVVFGEVIE 142

Query: 347 PCETFEVIRGLGAPLSSRP 403
             +  + I       +SRP
Sbjct: 143 GYDIVKEIESTPVGANSRP 161


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 36/141 (25%), Positives = 56/141 (39%)
 Frame = +2

Query: 5   LFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRR 184
           L+ E  P+TC+ F  L + +G    Y G  F   +P     GGD       G      + 
Sbjct: 17  LYTEHAPKTCQNFYTLAK-EGY---YDGVIFHRVIPDFVIQGGDPTGTGRGGTSIYGDKF 72

Query: 185 TPIGAENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVILPCETFE 364
                 + H  H+  G+LSM     +     F IT  P P  D ++ +FGRV+      +
Sbjct: 73  DDEIHSDLH--HTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCK 130

Query: 365 VIRGLGAPLSSRPVVEISAAK 427
            +  +    S RP+  +   K
Sbjct: 131 RMGLIRTDSSDRPIEPLKIIK 151


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
 Frame = +2

Query: 5   LFAECCPQTCKLFIDLLQGDGLGHGYVGTKFFTKVPGLYWSGGDVIHDNGFGCYAQRGRR 184
           L+ +  P+ C+ FI L     L   Y GT     VP     GGD     G G   +    
Sbjct: 28  LWCKEVPKACRNFIQLC----LEGYYDGTIVHRVVPEFLIQGGD---PTGTGMGGESIYG 80

Query: 185 TPIGAENYHYSHSLP-GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRVILPCETF 361
            P   E +     +  GL+ M  T+++     F IT  P P+++ +  +FGRV+     +
Sbjct: 81  EPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV-GDTIY 139

Query: 362 EVIR--GLGAPLSSRPVVEISAAKHRV-DNRWVYGKPNS 469
            V+R   L    + RPV         V DN +   KP S
Sbjct: 140 NVVRISELELDANQRPVFPPKIISTEVIDNYFTDIKPRS 178


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 200 ENYHYSHSLPGLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVV 328
           E Y YS  LP  +  +  K  E CG   I  K      LR ++
Sbjct: 79  EKYSYSSPLPSSVEFKSGKQVEFCGFEKIQSKQRDLKSLRVII 121


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 190 GRPSSPLGVTAEAIVVYHVSSTPVQTWDLREKFRPNVSMT*PISL 56
           G+  S +G+  +  ++ H+S +  +  D  +K  PN ++T  ISL
Sbjct: 112 GKTYSVVGLRGQPGIIPHISESIFEEIDKLKKKSPNTTITVSISL 156


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 224 ENVSSDSSRLRWASVFPFGRNSRSHCRV 141
           + V  D   +R+   FP+ RN++S+C V
Sbjct: 94  QKVIVDHPPVRYRVTFPWNRNAKSYCLV 121


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 305 QFDLRNVVFGRVILPCETFEVIRGLG 382
           ++ + +++F R I P E F+V+R  G
Sbjct: 24  EYAVNSILFQRGIYPAEDFKVVRKYG 49


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 82  RWDEIFHEGPRSVLEWRRRDTRQWLR 159
           +W+EI       + +W + + ++WLR
Sbjct: 497 QWEEIIKSVHECIYKWAQTNLQRWLR 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,761
Number of Sequences: 5004
Number of extensions: 51064
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)