Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte7a05
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    27   7.5  

>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 69  PPYDARGNTYALSPSLYCGTRSNCNSIRYRNWPCGVTMMRYPPTSQTSR-FRPKNTSP 239
           PP  A     A + + Y  T+   N+ R   WP G+    Y PT +    F+P   SP
Sbjct: 324 PPEAAYLMEVAKAVTTYRQTKDRANT-RAPTWPAGLAAQTYTPTVRDREGFKPVKQSP 380


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 173 SNNDALSTDLPDFAISPQ-EYITEIGQYLMTLPQHLELHLS 292
           SN  A S ++P FAISP    + E+ +   T+  H+E+ +S
Sbjct: 352 SNTQAPSRNMPTFAISPSTRRLGEVRRAPSTVNTHIEMPMS 392


>Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical
           protein R03A10.4b protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 8   LDSETRQRLSAIRSEPPGSTAALRRSREHLRSLAKSILRHPVELQLDKISQLAVWSNND 184
           ++S+  ++   +    P +      SR  L  LA+   +H + +  D++ +  VW  ND
Sbjct: 168 MESKINEKTKMLVINNPHNPTGKLFSRHELEKLAEIAKKHNLIVIADEVYEFHVWDKND 226


>Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical
           protein R03A10.4a protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 8   LDSETRQRLSAIRSEPPGSTAALRRSREHLRSLAKSILRHPVELQLDKISQLAVWSNND 184
           ++S+  ++   +    P +      SR  L  LA+   +H + +  D++ +  VW  ND
Sbjct: 185 MESKINEKTKMLVINNPHNPTGKLFSRHELEKLAEIAKKHNLIVIADEVYEFHVWDKND 243


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 244 DLGDVFLGRNREVWEVGG*RIIVTPHGQLRYLIELQFD 131
           D GDVFLGR ++    G   +   PH   +Y+++  ++
Sbjct: 228 DFGDVFLGRMKKGAAFGSQPVAHNPHLHPKYVLDYLYN 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,499
Number of Sequences: 27780
Number of extensions: 293328
Number of successful extensions: 1030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)