Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7a03
(245 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 47 4e-07
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 24 2.4
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 24 3.2
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 23 4.3
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 23 4.3
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 23 5.6
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 23 7.4
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 23 7.4
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 23 7.4
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 23 7.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 23 7.4
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 22 9.8
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 22 9.8
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 46.8 bits (106), Expect = 4e-07
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +3
Query: 18 LEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASXVKKYTELISAAV 188
LE+ + K G L ++ KV PS+IGG++V IGD +D+SV S + +L+S +
Sbjct: 160 LESRIAKSKYGKGKLLVSNKVTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLSEPI 216
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 134 VDIFIPN*NNHATNQ*RIHFSCKLQSFIA 48
+++F P+ +N TNQ ++ K Q++I+
Sbjct: 202 LEVFAPDESNILTNQGTLYMELKTQAYIS 230
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 153 LYLLHSCRHIYPQLK 109
L+LLHS R IYP+ +
Sbjct: 138 LFLLHSLRMIYPRAR 152
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 23.4 bits (48), Expect = 4.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 187 TAALISSVYFLTXLATLMST 128
TA SS+Y+ LATL+ST
Sbjct: 303 TAVGTSSIYYSFLLATLLST 322
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 23.4 bits (48), Expect = 4.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 65 LQSFIALQEFLKRCFQI 15
L+ F++ +EFLK C Q+
Sbjct: 398 LKGFLSKEEFLKFCIQV 414
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 53 IALQEFLKRCFQILPLC 3
I Q FL+ CF +L LC
Sbjct: 26 ILQQRFLRACFALLCLC 42
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 22.6 bits (46), Expect = 7.4
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 154 SRNTLSLS--VLLFKPKFHYKDLAHNEIY 234
S NT S S L F+P Y L+H +Y
Sbjct: 35 SGNTASSSSPTLQFRPTSRYPTLSHEPVY 63
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 163 TLSLSVLLFKPKFHYKDLAHNEIYLIS 243
T+ +S L F +F Y++ AH L+S
Sbjct: 674 TIRISSLGFPARFSYEEFAHRFRILLS 700
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 73 LKWILH*LVAWLFQLGINMS 132
++W LVAW+ +L I +S
Sbjct: 19 VQWTPQNLVAWIMELNIGLS 38
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 115 IETTMPPINEGSTLAVSCRVSLPFRNF 35
+ETT P L ++CR S FR F
Sbjct: 334 LETTPPSCEVSYNLLLTCRSSNRFRLF 360
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 22.6 bits (46), Expect = 7.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 184 AALISSVYFLTXLATLMSTYLSPIETTMPPINEGS 80
A +S+ + ++T++S +SP+ T PP GS
Sbjct: 725 AVHLSTAFSTAPVSTIVSN-ISPLPTVAPPNVSGS 758
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 22.2 bits (45), Expect = 9.8
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KLCSLQLKWILH 90
++C+L LKWI++
Sbjct: 165 QICNLSLKWIIY 176
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 22.2 bits (45), Expect = 9.8
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 30 LKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASXVKKYTELISAA 185
LK K E A +DP V + + A+ +K+YTE+ A
Sbjct: 378 LKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRA 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,364
Number of Sequences: 5004
Number of extensions: 14916
Number of successful extensions: 42
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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