Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte7a03
(245 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 42 7e-05
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423 27 1.6
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404... 27 2.1
07_03_0948 - 22821069-22822067 27 2.8
01_05_0227 - 19512866-19514983 27 2.8
10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139 26 4.9
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 26 4.9
02_05_0130 - 26070784-26070801,26071440-26072627 25 6.4
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 25 6.4
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 41.9 bits (94), Expect = 7e-05
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +3
Query: 6 QRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASXVKK 161
+ + L+ L+ L N+T+ + K+D S++GG+V+ G K DMS+ + K+
Sbjct: 163 EEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQKVFDMSIKTRAKQ 214
>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
Length = 529
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 3 AQRQNLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIG---DKYVDMSV 143
A++ L A + + G +L + VDPSLI G VV G +D+SV
Sbjct: 457 ARQTELIARKMRRITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLSV 506
>02_04_0538 +
23739830-23740126,23740205-23740261,23740344-23740441,
23740565-23740640,23741316-23741345,23741833-23741961,
23742077-23742123,23742477-23742531,23742939-23743038,
23743568-23743674,23743760-23743906,23744232-23744378,
23744473-23744526,23744873-23744914
Length = 461
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 184 AALISSVYFLTXLATLMSTYLSPIETTMPPINEGSTLAVSCR 59
A L++++ L + S+ SP ++ PP + +T A SCR
Sbjct: 29 ALLVAALLLLFLDQAVQSSTKSPASSSSPPPSPTTTAAASCR 70
>07_03_0948 - 22821069-22822067
Length = 332
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 172 LSVLLFKPKFHYKDLAHNEI 231
LS L+F P+ Y DL+HN I
Sbjct: 254 LSKLVFPPELTYLDLSHNRI 273
>01_05_0227 - 19512866-19514983
Length = 705
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 77 FSCKLQSFIALQEFLKRCF 21
F+C L S+I L LKRCF
Sbjct: 243 FACLLLSYIHLPHHLKRCF 261
>10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139
Length = 287
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 15 NLEAALKKFLKGNETLQLTAKVDPSLIGGMVVSIG 119
++ A+ + LK ET+++ K PS GM+ S G
Sbjct: 161 DIHPAVNRRLKEGETIRINVKNKPSTGSGMLSSAG 195
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 30 LKKFLKGNETLQLTAKVDPSLIGGMVVSIGDKYVDMSVASXVKKYTELISAA 185
+ K L G+ + ++ P L G +++IG Y D+ V KY+ + A
Sbjct: 671 IAKILLGSSSAAISGISKP-LFGYFIMTIGVAYYDLDAKRKVSKYSLIFFTA 721
>02_05_0130 - 26070784-26070801,26071440-26072627
Length = 401
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 133 STYLSPIETTMPPINEGSTLAVSCRVSLPFRNFLSAAS 20
S+Y ++ P TL + SLPF FLS AS
Sbjct: 86 SSYHRVTGVSLDPAGYSGTLPATVLASLPFLAFLSLAS 123
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = -2
Query: 184 AALISSVYFLTXLATLMSTYLSPIETTMPPINEGSTLAVSCRVS-----LPFRNFLSAAS 20
AA + +V +LT ++TY+ E + G T V + P+R L+ AS
Sbjct: 504 AAYLVAVVYLTFRKDTVATYVPVPERAQAQVEAGGTPVVDASAADEDQPAPYRKDLADAS 563
Query: 19 KFCL 8
C+
Sbjct: 564 IICI 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,857,121
Number of Sequences: 37544
Number of extensions: 91187
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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