Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p19
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.1  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   7.9  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   7.9  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 195 WYSNSKNSEPTQRELHVFADASELAYACVAYWRLLYSDGSIELSLISS 338
           W   +KN+  +   L    DA  L       W+LLY+D S ++ L+SS
Sbjct: 497 WSEYTKNTGESSPVLVALVDA--LPRNASVEWQLLYNDSSCDVPLLSS 542


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 426 IKDSHRKQPAHTFFWTDSMTVLQW 497
           I +++ K+P H F +TD  T+L W
Sbjct: 285 IVNANAKEPMHHFSFTDLDTLLNW 308


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 393 AALIASRLAVTIKDSHRKQPAHTFFWTDSMTVLQWLR 503
           A  +ASR+ +    S      H F+ TD++T L+W++
Sbjct: 265 AVALASRVYLWSGISSEVTVMHNFYPTDTVTSLRWVQ 301


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +3

Query: 75  FQQTWRSNVDWDTEFQPTEALRWSDWFQELSKVTS 179
           F+Q W +++ W+    P     W  W    S  TS
Sbjct: 372 FEQDWLASMSWNLSPGPRGQKAWEWWSASYSLFTS 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,064
Number of Sequences: 5004
Number of extensions: 60162
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)