Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p19
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617...    32   0.50 
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    28   8.1  
07_03_1697 - 28795521-28797328,28797430-28797550                       28   8.1  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    28   8.1  

>04_04_1357 +
           32860677-32860781,32861484-32861588,32861678-32861728,
           32861829-32861949,32862495-32862616,32863032-32863133,
           32863226-32863300,32863391-32863470,32863601-32863751,
           32863850-32864080,32864221-32864517,32864638-32864751,
           32864857-32865030
          Length = 575

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 393 AALIASRLAVTIKDSHRKQPAHTF-FWT--DSMTVLQWLRNDARSFKPFVAHRLGEIIEN 563
           AA IAS   +TI+DS +  PA  +  W    +   L+WL  +     PFV     E+I+ 
Sbjct: 36  AATIASFSKMTIEDSRKLLPADLYPSWVVFSTQQKLKWLNQELIKIWPFVNAAASELIKT 95

Query: 564 S 566
           S
Sbjct: 96  S 96


>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 105 WDTEFQPTEALRWSDWFQELSKVTSL 182
           W+ E  P +  RW +W+ + S++  L
Sbjct: 656 WELEEGPWQLKRWHEWYMKASRIKGL 681


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 535 ATKGLKERASLRNH*RTVIESVQKKVCAGCF 443
           A + +K RA  RNH R V++     +C+ CF
Sbjct: 406 AKEVVKRRAPPRNHCRPVLKGAPFIICSSCF 436


>01_01_0588 +
           4372877-4372949,4374328-4376262,4376940-4377015,
           4378900-4378970,4379038-4379144,4379241-4379711,
           4379791-4379976,4380132-4380425,4380820-4381434,
           4382219-4382615,4382768-4382850,4383397-4383567,
           4384046-4384243,4384754-4385314,4385401-4385460,
           4385553-4385869,4385980-4386403,4386539-4387006,
           4387093-4387209,4387306-4387427,4387506-4388247,
           4388453-4388485,4388625-4388879,4388975-4389160,
           4390115-4390453,4391293-4392045
          Length = 3017

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 465 FWTDSMTVLQWLRNDARSFKPFVAHRLGEIIENSCVRDW 581
           FW+ +     W++ND +S + F+ H      E SC   W
Sbjct: 191 FWSSNYPSKTWMQNDTKSQQGFLGH--VPTTETSCNCQW 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,184
Number of Sequences: 37544
Number of extensions: 379843
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)