Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p19
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.39 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.90 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 586 HRQSLTQEFSIISPKRWATKGLKERAS 506
           HR S T+  +I  P +W T+  ++R S
Sbjct: 600 HRSSSTKGITIQEPPQWHTRSTEKRVS 626


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 487 SFSGYVMMRALLSLLLPIV*AKLLKTLA 570
           SF G ++MR L   +LP++ + L+  +A
Sbjct: 97  SFPGELLMRLLKMFILPLIVSSLISGMA 124


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 474 DSMTVLQWLRNDARSFKPFVAHRLGEIIENSCVRDWRWVPT 596
           D   +LQ+   DAR     +A  L +I     VRD  W PT
Sbjct: 61  DVHMMLQFRYLDARLKFSNIAPYLNQIYGGQFVRDLIWTPT 101


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +3

Query: 528 FVAHRLGEI-IENSCVRDWRWV 590
           F+ H   E+ + N C  DW W+
Sbjct: 369 FMKHYENEMRLRNGCPADWLWI 390


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 3   LCHLMRVYDPLGLLAPI 53
           +CH +RVY   GL  PI
Sbjct: 143 ICHPLRVYTISGLKRPI 159


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 333 SSKARVTPLKPISIPRLELQAALIASRLAVTIKDSHRKQPAHTFFWTDSMTVL 491
           +S+  V P       ++ + AALIA ++ +T+     + P   FF+ D   V+
Sbjct: 612 ASRTAVRPRYISPASQVCIAAALIALQIVLTLVWMIIEPPGTRFFYPDRKQVI 664


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 333 SSKARVTPLKPISIPRLELQAALIASRLAVTIKDSHRKQPAHTFFWTDSMTVL 491
           +S+  V P       ++ + AALIA ++ +T+     + P   FF+ D   V+
Sbjct: 702 ASRTAVRPRYISPASQVCIAAALIALQIVLTLVWMIIEPPGTRFFYPDRKQVI 754


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 324 SLISSKARVTPLKPISIP 377
           +L +S  R+T L P+S+P
Sbjct: 599 TLDASHNRITELSPLSVP 616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,798
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)