Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p18
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   149   4e-37
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   4.4  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   4.4  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    26   5.8  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   5.8  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   7.7  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.7  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  149 bits (361), Expect = 4e-37
 Identities = 66/84 (78%), Positives = 75/84 (89%)
 Frame = +2

Query: 122 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 301
           AVIK  DMSE+MQQ+A+  A QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 302 VTHETRHFIYFYLGQXAILLFKSG 373
           VTHE+RHFIYFYLG  A LLFKSG
Sbjct: 62  VTHESRHFIYFYLGTVAFLLFKSG 85


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 83  KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNP 262
           +QKQ + +   RK   K   M+E+ +    +   + L K N+E       +K+     N 
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN- 585

Query: 263 TWHCIVGRN 289
            +H IV  N
Sbjct: 586 KYHPIVSSN 594


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 234 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 85
           L N   SF + N   +      A+ C+SSL+       L    L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 60  VKILITGDSMPTFQRILSQ 4
           VK+ +TG+SM TF  ILS+
Sbjct: 183 VKVTLTGESMYTFLSILSE 201


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 194 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 81
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +2

Query: 86  QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 202
           +K+T +  KM   K ++K AD+S  +Q+D +   T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 105 LSWVCFCFDK*TNSHVKILITGDSMPTFQRILS 7
           ++WV  C DK   SH++ L+  +S+ T  +I+S
Sbjct: 443 VAWVEHCKDKSATSHIETLL--ESLETNSQIIS 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,805
Number of Sequences: 5004
Number of extensions: 51011
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)