Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p17
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    29   0.58 
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   1.3  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   3.1  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   5.4  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   7.2  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    25   9.5  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 19  DRETAQHCVYKFKTQFLNYKYYRHENDLCIFNCCLSGYNYETTVFEFF 162
           D ++  +CVY    +F +Y +       C F+ C   + Y+ T  +F+
Sbjct: 741 DMDSMDNCVYLCIQKFESYGWGASSEMECYFSYCSLIFYYQATTLQFY 788


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 49  KFKTQFLNYKYYRHENDLCIFNCCLSGYNYE-TTVFEFF 162
           K KT F     Y H+ D+   +C +SGY+ E  TV + F
Sbjct: 252 KGKTTFQPPSEYCHDEDMDSLHCLMSGYSTEHHTVDDLF 290


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 49  KFKTQFLNYKYYRHENDLCIFNCCLSGYNYETTVFEFFI 165
           ++ T  L Y   + E+D C F    S +++ T+   FFI
Sbjct: 114 QWSTDELRYFLCKKESDSCYFGNASSSFHFVTSPSTFFI 152


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 167 YFTLKNTKALKTKEDADPTKQKTKS 241
           YFT K++     KEDA  TKQ   S
Sbjct: 774 YFTSKDSNLQTLKEDASSTKQAKDS 798


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 5   FYWNVTGRPRNIVFTSLKLNS*II-NITDTKMTY 103
           F+W++T       +TSL LN+ I  NI D    Y
Sbjct: 14  FFWSITRNIFGATYTSLLLNNTINGNINDQSTAY 47


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 215 DPTKQKTKSFMVSWKKIPHLFLPKNFYCPEVNSTA-YTNK*PLY*LIYHNINVTNL 379
           DP + +   F  S  + P   LP+  YC      A YT+  P   L YHN  +  L
Sbjct: 41  DPVQNEPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTD--PKTRLRYHNKEIYGL 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,470
Number of Sequences: 5004
Number of extensions: 37482
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)