Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6p14
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 170 1e-42
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 151 5e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 2.6
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 2.6
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 29 3.4
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.0
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 170 bits (413), Expect = 1e-42
Identities = 101/218 (46%), Positives = 125/218 (57%), Gaps = 39/218 (17%)
Frame = +3
Query: 87 KQYFKSYQVK--FKRRREGKTDYYARKR------------------------LVVQDKNK 188
K + SY+V RR +GKTDYYARKR ++ Q++NK
Sbjct: 3 KIFADSYRVLALLSRRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNK 62
Query: 189 YNTP------KYRLIVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKV 329
P KYR R NK ++AY++++GD ++ +AY+HELP +GVKV
Sbjct: 63 VGGPIFGSTQKYRRNSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKV 122
Query: 330 GLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGL 509
GLTNYAAAY TG EYNVE VD PGAFRC+LDVGL
Sbjct: 123 GLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGL 182
Query: 510 ARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESK 623
ART+TGARVFGA+KGAVDGGL +PHS+KRFPGYD+ESK
Sbjct: 183 ARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSESK 220
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 622 KKFNAEVHRAHIFGLHVA 675
K F+AEVHR HIFG HVA
Sbjct: 220 KDFSAEVHRNHIFGKHVA 237
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 151 bits (366), Expect = 5e-37
Identities = 69/112 (61%), Positives = 80/112 (71%)
Frame = +3
Query: 249 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 428
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 429 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 584
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 574 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 461
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 574 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 461
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 146 ISFPFTTPLEFYLVALEVLFVLHNFNESHILNLSYK 39
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 210 LIVRLSNKDVTCQVAYSRIEGD-HIVC 287
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 258 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 356
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +3
Query: 66 FVKVVKNKQYFKSYQVKFKRRREGKTDYYARKRLVVQD-KNKYNTP--KYRLIVR---LS 227
F K K Y +S Q + + R EGK+ + +R+ + N N P K + V LS
Sbjct: 43 FGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYELLS 102
Query: 228 NKDVTCQVAYSRIEGDHIV 284
K++TC + +GD ++
Sbjct: 103 QKEITCPYTFPEGDGDILI 121
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 619 DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 521
D+ P +M T+RPP T F+ T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,339,934
Number of Sequences: 59808
Number of extensions: 450755
Number of successful extensions: 1392
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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