Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p12
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    29   0.43 
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.43 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.57 
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    29   0.75 
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    28   1.3  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    27   3.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   3.0  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   3.0  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.3  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.3  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   7.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   9.3  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   9.3  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   9.3  

>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
 Frame = +3

Query: 57  NNL--LANLKLFKVLIGIFMNMEK-RIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYT 227
           NN+  + N+   K L  +F    + R I    G D     EL  +  R   ++   D   
Sbjct: 114 NNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIR---VIENLDTLV 170

Query: 228 NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRIS--NGLTFLSGCKKLAHLNLSG-NKI 398
           NL+ L +    +T  + F  L  L  L +  NRI+    L  LS C +  +++ +G    
Sbjct: 171 NLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSF 230

Query: 399 KDLETLKPLE 428
             +E L+ LE
Sbjct: 231 SGIEVLENLE 240


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 177 LDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNG 338
           LD CR+ +   ++  Y +LQIL+   VG   +    T P       +D  I++G
Sbjct: 518 LDPCRAMDPKVVSTSYVSLQILNKPYVGFRNINANYTFPTTSYSRRNDEEITSG 571


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 228  NLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLS-GCKKLAHLNLSGNKIKD 404
            +++ L L+N    TL        +R LEL++ ++     +++     L  L+LS N I D
Sbjct: 846  DIRNLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISD 905

Query: 405  LETLKPLE 428
            +E+LKPL+
Sbjct: 906  IESLKPLQ 913


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 886

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
 Frame = -3

Query: 391  FPERFKCASFLQPLRKVSPFDILLSDSSNFLSIGRVGKPLSVVRPTLLRLSICKFVYSSV 212
            F   FK  S L P      +   LS S++++    V  P S+++ TL    + KF  S  
Sbjct: 723  FGSLFKNVSGL-PAETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFKF--SPS 779

Query: 211  KPTMFVLLQLSRFSSF---TCEGSLPLRSKMILF-SMFINIPINTL 86
            +P   +     ++ +    +  G LP++SKM+L+ S  I+ P++++
Sbjct: 780  QPLSSLGKNKEKYDALLERSSHGVLPVQSKMLLYNSNHISCPLSSI 825


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 196 VLLQLSRFSSFTCEGSLPLRSKMILFSMFINIPINTLNNF 77
           +LLQ   ++++ C G+  L S  + +   + IP  TL +F
Sbjct: 113 ILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 262 RPTLLRLSICKFVYSSVKPTMFVLL 188
           RP + RL   KF YSS++ T+F L+
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALV 131


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 259 VSQHSKVFRPCLCSENWNCQTIEYQMD 339
           + QH       L + NW+CQ I+  MD
Sbjct: 458 LQQHKNTIENQLAAANWDCQKIDEFMD 484


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 274 LSVVRPTLLRLSICKFVYSSVKPTMFVL 191
           +S V P        KFV SS+KPT+ VL
Sbjct: 642 ISAVPPAEYASRFYKFVESSIKPTLLVL 669


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 192  STNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLA 371
            S N +G TD Y      +L    L   K F      R+  LSD++ +  +  L   KKL+
Sbjct: 811  SENDIGGTDIYP----FALQGAALAAAKDFSR----REASLSDSQSAASMDMLPMKKKLS 862

Query: 372  HLNLSGNK-IKDLET 413
            H + S  + IK L T
Sbjct: 863  HSSASSTRSIKSLLT 877


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 279 FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLET 413
           F +L  L  L+LS N ++     L    +L  LNL+ NKI    T
Sbjct: 352 FLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 283 GKPLSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSR-FSSFTCEGSLPLRSKMILFSMF 110
           G  +  V   LL L  C F++ ++KP +++L   +R       E  + +   M+L S F
Sbjct: 218 GSGVRAVYILLLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSESFICIVLSMVLVSAF 276


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 166  FTCEGSLPLRSKMILFSMFINIPINTLNNFRFANKLFLKEL 44
            F CE    L  K+   S F N PI   N+F     LF  E+
Sbjct: 907  FICESVYHLHDKV---SKFQNFPITNTNSFLEPKMLFATEI 944


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 246 LNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSG 389
           LN +G     G  TL +    +L+D  +  G+     C +L HLNLSG
Sbjct: 394 LNQIG----SGLHTLSLSGCTKLTDEVLKQGIG--PCCGRLKHLNLSG 435


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 256 TLLRLSICKFVYSSVKPTMFVLLQLSRFSSFTCEGSLP-LRSKMILFSMFINIPINTLNN 80
           T  + SI  FVY   +   F+    S          +  L S ++LFS+F+ IP +   N
Sbjct: 67  TFFKKSIFFFVYYCKQALEFISTVFSIIKFLLNRRKVSFLLSFLLLFSLFLLIPNDGRVN 126

Query: 79  FRFANKLFLKEL 44
            +F  K F+  +
Sbjct: 127 IKFFYKDFVDRI 138


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 115 WKRGSSWNAEGGI 153
           WKR  +WN E G+
Sbjct: 124 WKRNKAWNTENGL 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,799
Number of Sequences: 5004
Number of extensions: 43178
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)