Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p09
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    64   1e-11
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    48   8e-07
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.7  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   8.7  

>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 28/70 (40%), Positives = 47/70 (67%)
 Frame = +1

Query: 301 EQQLTDALKKAMPGITYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEI 480
           E+++ D L + +   + + V D+SGGCG+M+++++++K F G N + QHRLV   LK EI
Sbjct: 33  ERRIKDILTEKLSPSS-LRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEI 91

Query: 481 AEMHGIRIHT 510
             MHG+ + T
Sbjct: 92  RNMHGLNLST 101


>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = +1

Query: 346 TYISVQDISGGCGAMFEISVEAKEFVGLNRVKQHRLVTDSLKNEIAEMH 492
           T+I +QD+SGGCG  FE+ + +  F G + + +HRLV   L+  I ++H
Sbjct: 18  THIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIH 66


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 540 LKREIASKFSEMTNFWKKYIKIQL 611
           LK+E   K  +   FWKKY+++QL
Sbjct: 537 LKKE--KKIPKKLPFWKKYLELQL 558


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 545 LQQYSHCVAAGVV*IRMPCISAISFFRESV 456
           L +Y+ C+  G+  I  P +  +S F+E +
Sbjct: 688 LSRYTSCIGPGLFDIHSPRVPPVSEFKERI 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,371
Number of Sequences: 5004
Number of extensions: 48940
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)