Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6p03
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0290 - 16429495-16429559,16430040-16430316,16430410-164305...    28   6.0  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    28   6.0  
11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284...    28   8.0  

>09_04_0290 -
           16429495-16429559,16430040-16430316,16430410-16430571,
           16431308-16431926,16431976-16432172
          Length = 439

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +1

Query: 349 SGTPCGSNVQCRNECGDKVAARLMRDFWNILKED--PSCNLAHEVQNRLCARPSSRSCDS 522
           S   C   V+  +   DK+  R   D+  +L      S +LA  + N L    S  SCD 
Sbjct: 78  SSAACPGRVRSFSAYVDKLTTRRAHDWILVLARRGVESLDLASPIHNHLAVHSSVFSCDR 137

Query: 523 CSHRQHIAC 549
            ++    AC
Sbjct: 138 LAYLNLFAC 146


>04_04_1193 +
           31634043-31634349,31634685-31634847,31635048-31636622,
           31636653-31637541,31639401-31641266
          Length = 1599

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 667 MYSISALISDQDYSYKKF*LCSERPFSGRHRRHVYDPPYNKLCVADASNYRRSETRVVR 491
           M+ ++ L+S  +++      C E P + RH   + D  YNK    D S     E R+++
Sbjct: 582 MHDLAKLVSQSEFATIDGSECEELPSTIRHVSILTDSAYNKYEDGDFSRNEEFERRLLK 640


>11_04_0203 -
           14828009-14828110,14828171-14828269,14828375-14828461,
           14828733-14829111,14829214-14829377,14829544-14829636,
           14829843-14829989,14830065-14830166,14830392-14830490,
           14830669-14830803,14830928-14831006,14831111-14831186,
           14831281-14831370,14831723-14831798,14831880-14831914,
           14832303-14832377,14832468-14832840
          Length = 736

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 406 AARLMRDFWNILKEDPSCNLAHE----VQNRLCARPSSRSCDSCSHR 534
           A R+ R FW+  + D   + A      VQNR+C  P     ++ SH+
Sbjct: 99  ARRISRSFWSAGEYDADTSGAARPPGNVQNRMCVHPKFLHSNATSHK 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,301,194
Number of Sequences: 37544
Number of extensions: 342917
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)