Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o23
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    68   7e-14
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    54   9e-10
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    44   2e-06
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                43   3e-06
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    42   5e-06
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    42   5e-06
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 68.1 bits (159), Expect = 7e-14
 Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
 Frame = +1

Query: 163 LGKGHFARVEEATHRIIG---AKVAVKVIDLTCIKEEYARRNLHREPRVMARLRHPCIAA 333
           LG G F RVE    +I G      A+K +    I E   ++++  E R+M       +  
Sbjct: 373 LGVGGFGRVELV--QIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVVK 430

Query: 334 LYETMMHGPRLYVVMEAAGGGDLCSHVLGARGGARGLPEHRARALAAQLVSAVRHMHARA 513
           L++T      LY++MEA  GG+L + VL  +G      +   R   A +V A  ++H+R 
Sbjct: 431 LFKTFKDRKYLYMLMEACLGGELWT-VLRDKGH---FDDGTTRFYTACVVEAFDYLHSRN 486

Query: 514 VVHRDLKMENIMLDSTKQFIKIVDFGLS 597
           +++RDLK EN++LDS + ++K+VDFG +
Sbjct: 487 IIYRDLKPENLLLDS-QGYVKLVDFGFA 513


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 54.4 bits (125), Expect = 9e-10
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = +1

Query: 289 EPRVMA-RLRHPCIAALYETMMHGPRLYVVMEAAGGGDLCSHVLGARGGARGLPEHRARA 465
           E RV+A   + P +  L+       RLY VME   GGDL   +   + G     E  A  
Sbjct: 34  EKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQI--QQCGK--FKEPVAVF 89

Query: 466 LAAQLVSAVRHMHARAVVHRDLKMENIMLDSTKQFIKIVDFGL 594
            A+++   +  +H R +V+RDLK++N++LD     IKI DFG+
Sbjct: 90  YASEIAIGLFFLHGRGIVYRDLKLDNVLLDQDGH-IKIADFGM 131


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 43.6 bits (98), Expect = 2e-06
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +1

Query: 475 QLVSAVRHMHARAVVHRDLKMENIMLDSTKQ--FIKIVDFGLS 597
           Q++ +V H H   VVHRDLK EN++L S  +   +K+ DFGL+
Sbjct: 17  QILESVHHCHHNGVVHRDLKPENLLLASKAKGAAVKLADFGLA 59


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 42/166 (25%), Positives = 72/166 (43%)
 Frame = +1

Query: 106 TKSKNQVYSVGNYLMTGRVLGKGHFARVEEATHRIIGAKVAVKVIDLTCIKEEYARRNLH 285
           T ++ ++   G  +  G  LG G F  V +A ++  G +VA K+I      E+Y+  N+ 
Sbjct: 54  TPNRQKILKDGFPIKCGTFLGSGGFGIVYKALYK--GEQVAAKIIQT----EKYS--NML 105

Query: 286 REPRVMARLRHPCIAALYETMMHGPRLYVVMEAAGGGDLCSHVLGARGGARGLPEHRARA 465
              +  + L+H  I  +           + ME      LC   L  R     L ++    
Sbjct: 106 NSEKHASFLKHSNIVKVLMIEQGASLSLITME------LCGTTLQNRLDEAILIKNERIC 159

Query: 466 LAAQLVSAVRHMHARAVVHRDLKMENIMLDSTKQFIKIVDFGLSNL 603
           +   +  A++  H   +VH D+K +NI++    Q  K+ DFG S L
Sbjct: 160 ILKSITCALQFCHNAGIVHADVKPKNILMSKNGQ-PKLTDFGSSVL 204


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 15/42 (35%), Positives = 31/42 (73%)
 Frame = +1

Query: 466 LAAQLVSAVRHMHARAVVHRDLKMENIMLDSTKQFIKIVDFG 591
           +A  ++  +R++H++ +VHRD+K++N++LD   +  K+ DFG
Sbjct: 702 IALDVLEGIRYLHSQGLVHRDVKLKNVLLDIENR-AKLTDFG 742


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 15/42 (35%), Positives = 31/42 (73%)
 Frame = +1

Query: 466 LAAQLVSAVRHMHARAVVHRDLKMENIMLDSTKQFIKIVDFG 591
           +A  ++  +R++H++ +VHRD+K++N++LD   +  K+ DFG
Sbjct: 740 IALDVLEGIRYLHSQGLVHRDVKLKNVLLDIENR-AKLTDFG 780


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 72 MHNICSR*KLRKIILIS 22
          MHNICSR  L +I+LIS
Sbjct: 1  MHNICSR--LGRILLIS 15



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 419 GLAGARGASPSTGHVLSPHSS 481
           GLA  RG+  S   +LSP +S
Sbjct: 425 GLADRRGSESSDSVLLSPEAS 445


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 242 SITLTATLAPIILCVASSTRAKCPFPKTLPV 150
           S+TL     P  L   S+T A  P P ++PV
Sbjct: 29  SLTLVKAETPEHLAGTSTTAAATPTPPSVPV 59


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +3

Query: 543 HHVGQYKAVYKNSRFRVIESLELERR 620
           HH+  ++ +Y+ S + + E+ + E+R
Sbjct: 74  HHLHHHQVLYQQSPYLMYENPDEEKR 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,707
Number of Sequences: 438
Number of extensions: 3409
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)