Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o22
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    29   0.73 
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    27   1.7  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   3.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   3.0  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   3.9  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    26   3.9  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   3.9  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   5.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.0  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.0  

>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 278 LSLVQCGFTRMNFGRFIINRVYIGVGTSLLFLALLHWYVMCYSLALLISNSRGHTMFQNG 457
           ++L   G  R N    I+ + ++   T+++F+    WY+  YSLA    +S   T++Q G
Sbjct: 50  IALYYAGMVRKNSALSILTQSFLV--TAVVFI---QWYLFGYSLACSSGSSFYGTLWQGG 104

Query: 458 VRQL 469
           +  L
Sbjct: 105 MNHL 108


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 317 GRFII-NRVYIGVGTSLLFLALLHWY 391
           G F+  NRV +G+G++ LFLA L +Y
Sbjct: 48  GEFLYQNRVSVGLGSAALFLAGLSYY 73


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 536 YWWIRDVSSGSSLTMFPV 589
           +WW+ D+S    L +FPV
Sbjct: 225 FWWVNDLSQPDPLHIFPV 242


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 434 GHTMFQNGVRQLERFLEAERVDKNLIYKTVRHFRY 538
           G T+ + G+  L+R  EA+  DKN + + + HF +
Sbjct: 557 GQTLVEVGI--LKRLCEADPADKNNVIRYLSHFDF 589


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 199 PLRRTTGVYWI*KIKRNNTRNSSILRQHDTLQIINKLTRHKTND 68
           PLR T+  Y++    +NN  N+S L Q + L+ + +    K +D
Sbjct: 266 PLRETSNPYFLRDFLKNNA-NTSTLGQSEQLRYLEEALSLKLSD 308


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +2

Query: 359 SLLFLALL---HWYVMCYSLALLISN 427
           +L F+ +L    WY++CY+LA+ + N
Sbjct: 45  ALFFIRILLVRGWYIVCYTLAIYLLN 70


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 398 CYSLALLISNSRGHTMFQ--NGVRQLER 475
           C+ LAL + +S GH +F+  NG   +ER
Sbjct: 232 CFVLALQVISSFGHDLFRQSNGAMMMER 259


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 523 TPF*ILVDKGCIFGQLTDDVSRPIKISASAESHA 624
           +P  ILVDK      + ++ S+P+  SAS   H+
Sbjct: 320 SPLNILVDKAKAKASIKENASQPVAPSASQREHS 353


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 60  IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ 173
           +C  F   L+ +L ICS+ C   +  FLV F L   I+
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVLFTNIK 38


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 151 NNTRNSSILRQHDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALW 8
           N+ R S  L   D   I+ KL+  K ND  I+ + I  +  D    LW
Sbjct: 525 NSERISHTLELQD---ILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 446 FQNGVRQLERFLEAERVDKNLIYKTVRHFRYW 541
           F NG+  ++R  E   V      K + HF Y+
Sbjct: 219 FINGINSVQRIAELANVSYRSCQKCMEHFLYY 250


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 474 LSNCLTPF*NIVCPLEFEIKSAK 406
           L NC+TP  N++   ++EI+  K
Sbjct: 326 LDNCITPLYNLMHDQQYEIRDQK 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,360
Number of Sequences: 5004
Number of extensions: 54588
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)