Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o22
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0471 - 17563245-17563488,17563564-17563655,17563941-175640...    33   0.25 
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    30   1.3  
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938...    30   1.7  
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571...    29   4.0  
09_06_0023 - 20299435-20299528,20299666-20299757,20299873-202999...    28   5.3  
02_02_0592 - 11934238-11934249,11934755-11934835,11935166-119353...    28   7.0  
02_02_0109 + 6830802-6833412,6833491-6833861                           28   7.0  

>08_02_0471 -
           17563245-17563488,17563564-17563655,17563941-17564023,
           17564418-17564499,17565234-17565461,17565553-17565654,
           17565818-17565953,17566080-17566129,17566465-17566572,
           17568702-17568911
          Length = 444

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 219 KKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTIH 109
           +K     R DA + F G K + E++++ +LYYDN ++
Sbjct: 116 EKVFASTRFDAVVHFAGLKAVGESVQKPLLYYDNNVN 152


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 198 RSDARLEFTGYKKLNETIREIVLYYDNTI 112
           R +A + F G K + E++++ +LYYDN +
Sbjct: 82  RFEAVIHFAGLKAVGESVQKPLLYYDNNL 110


>09_02_0435 -
           9384225-9384412,9385084-9385133,9385209-9385274,
           9385360-9385451,9385893-9385975,9386181-9386259,
           9386888-9387115,9387196-9387297,9387719-9387854,
           9387984-9388033,9389391-9389618
          Length = 433

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 198 RSDARLEFTGYKKLNETIREIVLYYDNTI 112
           R DA + F G K + E++++ +LYYD+ +
Sbjct: 93  RFDAVVHFAGLKAVGESVQKPLLYYDHNV 121


>08_01_0661 -
           5708088-5708131,5708217-5710048,5710527-5710625,
           5711015-5711508,5711579-5711632,5712597-5712683,
           5712684-5712776
          Length = 900

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 343 YWRGNITAIPSTAPLVRDVL 402
           +WRGN +A P+ A + RD+L
Sbjct: 822 WWRGNSSAYPTLAMMARDIL 841


>09_06_0023 -
           20299435-20299528,20299666-20299757,20299873-20299955,
           20300066-20300147,20300235-20300462,20300646-20300747,
           20300834-20300969,20301105-20301514
          Length = 408

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 231 KVNYKKKSVCVRSDARLEFTGYKKLNETIREIVLYYDNTI 112
           K + +K     R DA + F G K + E++    +YY+N +
Sbjct: 126 KDDMEKVFAAKRYDAVIHFAGLKAVGESVAHPQMYYENNV 165


>02_02_0592 -
           11934238-11934249,11934755-11934835,11935166-11935324,
           11936362-11936442,11936523-11936591,11937147-11937260,
           11937805-11937858,11938788-11938915,11940527-11940782
          Length = 317

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -2

Query: 163 KIKRNNTRNSSIL---RQHDTLQIINKLTRHKTND*QIYENTIMRETRDQYEALWR 5
           K K NN   +S L    +HD   ++NK    K +  + Y  + ++   D+ + LWR
Sbjct: 97  KSKANNLEENSNLIGTMEHDIEILMNKYESTKKSQSKSYPESNVKALEDEVQLLWR 152


>02_02_0109 + 6830802-6833412,6833491-6833861
          Length = 993

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 501 LSTLSASKNLSNCLTPF*NIVCPLEFEIKSAKL*HITYQWSSARN-SSDVPTPI*TLLIM 325
           +S L+  + L+  + PF     P  F ++  +L  +TY W S  N + ++P  + +L  +
Sbjct: 190 ISNLADLERLTLAVNPF----VPAPFPVEFGRLTRLTYLWLSNMNITGEIPENLSSLREL 245

Query: 324 NLPKF 310
           NL  F
Sbjct: 246 NLLDF 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,837
Number of Sequences: 37544
Number of extensions: 288737
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)