Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o22
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical pr...    33   0.13 
D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic nucleoti...    33   0.13 
U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical
           protein ZC84.2 protein.
          Length = 733

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 365 LFLALLHWYVMCYSLALLISN-SRGHTMFQNGVRQLERFLEAERVDKNLIYKTVRHFRYW 541
           L   +L +  +  ++  +ISN S   T FQN +  +++++E  +V K L  + ++ F Y 
Sbjct: 396 LMCGVLIFATIVGNVGSMISNMSAARTEFQNKMDGIKQYMELRKVSKQLEIRVIKWFDYL 455

Query: 542 W 544
           W
Sbjct: 456 W 456


>D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 733

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 365 LFLALLHWYVMCYSLALLISN-SRGHTMFQNGVRQLERFLEAERVDKNLIYKTVRHFRYW 541
           L   +L +  +  ++  +ISN S   T FQN +  +++++E  +V K L  + ++ F Y 
Sbjct: 396 LMCGVLIFATIVGNVGSMISNMSAARTEFQNKMDGIKQYMELRKVSKQLEIRVIKWFDYL 455

Query: 542 W 544
           W
Sbjct: 456 W 456


>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 36  SLIIVFSYIC*SFVLCLVNLLIICSV 113
           +L    +YIC S +LC+  L+++C V
Sbjct: 205 TLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 36  SLIIVFSYIC*SFVLCLVNLLIICSV 113
           +L    +YIC S +LC+  L+++C V
Sbjct: 227 TLFSSITYICGSIILCIAVLMVVCVV 252


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 60  IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIFYIQ*T 179
           IC  + L ++ +  +   +C  NI  FL++F L+F ++ T
Sbjct: 146 ICFVWTLIIITIRNLVEWTCDSNIFTFLIIFYLVFILRFT 185


>AF067220-2|AAC16978.1|  588|Caenorhabditis elegans Hypothetical
           protein C33E10.5 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 365 LFLALLHWYVMCYSLALLISNSRGHTMFQNGVRQLERFLE-AERVDKN 505
           +FL L+   V C + AL+I+  R +T+  + +RQL +F+E A+   KN
Sbjct: 5   IFLNLVE--VSCTTYALVIALVRTNTLLDDQLRQLIKFVEDAKEQRKN 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,406
Number of Sequences: 27780
Number of extensions: 294371
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)