Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o22
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   1.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   1.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   1.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.9  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 548 LSTNI*NGVLFCKSNSYQPFRLLKTFPIVSL 456
           L+T + N ++     +Y+P R+++ F IVSL
Sbjct: 48  LATVLGNALVILSVFTYRPLRIVQNFFIVSL 78


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 548 LSTNI*NGVLFCKSNSYQPFRLLKTFPIVSL 456
           L+T + N ++     +Y+P R+++ F IVSL
Sbjct: 48  LATVLGNALVILSVFTYRPLRIVQNFFIVSL 78


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 548 LSTNI*NGVLFCKSNSYQPFRLLKTFPIVSL 456
           L+T + N ++     +Y+P R+++ F IVSL
Sbjct: 48  LATVLGNALVILSVFTYRPLRIVQNFFIVSL 78


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 108 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSG 200
           +V  C  I   + +  L+F+ + TPVVR SG
Sbjct: 520 AVISCLGIVATMAVACLLFHHRDTPVVRASG 550


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 108 SVSCCRNIELFLVLFRLIFYIQ*TPVVRRSG 200
           +V  C  I   + +  L+F+ + TPVVR SG
Sbjct: 610 AVISCLGIVATMAVACLLFHHRDTPVVRASG 640


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 105 CSVSCCRNIELFLVLFRLIFYI 170
           C +SC  NI   ++L   +FY+
Sbjct: 105 CVLSCWTNIYYIIILAWALFYL 126



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +3

Query: 96  LIICSVSCCRNIELFLVLFRLIFYI 170
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVVGFM 340


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 105 CSVSCCRNIELFLVLFRLIFYI 170
           C +SC  NI   ++L   +FY+
Sbjct: 158 CVLSCWTNIYYIIILAWALFYL 179



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +3

Query: 96  LIICSVSCCRNIELFLVLFRLIFYI 170
           LI+C+V+ C ++   +V+F ++ ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVVGFM 393


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 54  SYIC*SFVLCLVNLLIICSVSCCR 125
           S++    +LC  ++L +C++S  R
Sbjct: 113 SWVSLDILLCTASILSLCAISIDR 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,292
Number of Sequences: 438
Number of extensions: 3674
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)