Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o20
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.81 
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.4  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   4.3  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   9.9  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    25   9.9  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   9.9  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 273  RDVKDALKQIFSKRNIDPEQIKEINNYYDIETTVTVEFDTGQAYRDFVA 419
            R + DAL +I+   N +PE   + NN+YD   TV    +    Y  F+A
Sbjct: 870  RAIYDALAKIYIDSNNNPEVFLKENNFYD-TLTVGKYCEKRDPYLAFIA 917


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 655 FSCYFGSSCHSGACVCR 605
           FSCYFGS  HS   +C+
Sbjct: 108 FSCYFGSDGHSNDTLCQ 124


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
 Frame = +3

Query: 204 SEGLTKAKSYNDNDLR-----TLNPREVRDVKDALKQIFSKRNIDPEQI-KEINNYYDIE 365
           S+     K   D DLR      +N R +  V   + + +    ++ E+  K +N  + I 
Sbjct: 343 SKNKKSQKRKKDEDLRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKFDKHMNTLFAI- 401

Query: 366 TTVTVEFDTG----------QAYRDFVAGPYFRNRYESKIK*RKAT 473
            T T  F+T            A RDF++  Y+++ YES +  R  T
Sbjct: 402 -THTASFNTSVQVLMLIFQASASRDFISDRYYKSLYESLLDPRLTT 446


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
 Frame = +1

Query: 403 TETLLPDLTSETGTNRRSNNGKLQTDP-----FSGDHCAEC 510
           TET  P L  E  TN      K + D       +G HC+EC
Sbjct: 303 TETASPLLQYEWYTNETEAEAKARRDKRLGELLTGKHCSEC 343


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 524 PGHHKHSAQWSPENGSVCSFPLFDLR 447
           P HH  + +      S+CS PL DL+
Sbjct: 76  PSHHIFTRKCLVSRASICSTPLGDLK 101


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 667 CXLRFSCYFGSSCHSGACVCRGCS 596
           C  RFS    S CHSGA V  G S
Sbjct: 174 CVRRFSPASNSCCHSGAPVHSGPS 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,546
Number of Sequences: 5004
Number of extensions: 45394
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)