Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o20
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064...    30   1.5  
02_02_0298 - 8713660-8714073                                           29   2.6  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     29   4.5  
03_05_0775 - 27621379-27621484,27622506-27622813                       28   5.9  
02_04_0141 + 20162276-20162285,20162460-20162726,20162734-201628...    28   5.9  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    28   7.8  
01_01_0381 - 2961422-2963917                                           28   7.8  

>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
            10606664-10608382,10609848-10610791
          Length = 1091

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 249  RTLNPREVRDVKDALKQIFSKRNIDPEQIKEINNYYDIETTVTVEF 386
            R + P      K+    +F K N+D ++++ + ++YDIE  V   F
Sbjct: 1012 RYIAPAFTEYAKEFAGAVFIKVNVDSDELESVTDWYDIEGIVPTFF 1057


>02_02_0298 - 8713660-8714073
          Length = 137

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 373 LQWNLIRDKHTETLLPDLTSETGTNRRSNNGKLQTDPFSGDHCAEC 510
           L+W + + K  +  L D+  E    R+ N G L T   +GD CA C
Sbjct: 60  LEWLMAQLKAGDRRLEDVLQEMA--RKRNRGLLTTAAAAGDACAAC 103


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
 Frame = +3

Query: 186 PVTSTISEGLTKAKSYNDNDL-RTLNPREVRD--------VKDALKQIFSKRNID 323
           PV  T+  GL   K Y    + RTL  R +R+        VK  +  +FSK+N+D
Sbjct: 135 PVPDTLLWGLATNKKYTTKSMYRTLTFRGIRELNTSMWLSVKSRVSDLFSKKNLD 189


>03_05_0775 - 27621379-27621484,27622506-27622813
          Length = 137

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 24  FQVNLKKKTGKKHQNSKCPLIMHLLVY 104
           +Q+++ KK+ K    ++CP ++  LVY
Sbjct: 105 YQISILKKSTKPSTRNRCPYLLQFLVY 131


>02_04_0141 +
           20162276-20162285,20162460-20162726,20162734-20162881,
           20163025-20163091,20163878-20163955,20164034-20164039
          Length = 191

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 33  NLKKKTGKKHQNSKCPL 83
           NLKKK  KK +NS CPL
Sbjct: 172 NLKKKKKKKKKNSGCPL 188


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 338 LNLLRINVPLRKYLFQGVFDIPHFPRIQSPEVIVVVALR 222
           LN LR++   RK L+    DI   PR Q   +I V A R
Sbjct: 322 LNALRVDEDRRKLLYVSKEDINAIPRFQGSTLIAVNAPR 360


>01_01_0381 - 2961422-2963917
          Length = 831

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +1

Query: 361 SRPLLQWNLIRDKHTETLLPDLT----SETGTNRRSNNGKLQTDPFSGDHCAE 507
           S+P   W  + D  T+TLLP         TG NRR  + K    P  G +C E
Sbjct: 155 SQPRTLWQSV-DHPTDTLLPGAKLGRDKLTGLNRRLVSKKSMAGPSPGAYCFE 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,705,721
Number of Sequences: 37544
Number of extensions: 288888
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)