Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o20
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.21 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         25   0.66 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.66 
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   2.6  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   3.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   8.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 491 PENGSVCSFPLFDLRFVPVSEVRSGNKVSVCLSRIKFHCNSGLDV 357
           PENG   +  L+ ++ +  + + SGNK+S+  S+     NS  +V
Sbjct: 530 PENGEAFAQNLYAMK-MNETYINSGNKISLATSKSFIKANSQTEV 573


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 640 GSSCHSGACVCR 605
           G SC +G C+CR
Sbjct: 92  GGSCRNGVCICR 103


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 637 SSCHSGACVCRGCSGYGGF*RRSLTSSYV 551
           S  H  A  C GC    GF RRS+T + V
Sbjct: 195 SGYHYNALTCEGCK---GFFRRSITKNAV 220


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 640 GSSCHSGACVCRGCS 596
           G  C  G C+CR  S
Sbjct: 71  GGHCEKGVCICRKTS 85


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 640 GSSCHSGACVCR 605
           G  C  G C+CR
Sbjct: 46  GGHCEKGVCICR 57


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 269 FPRIQSPEVIVVVALRFSQTFRYRARYR 186
           +PR+++P  I     R   T  YR++ R
Sbjct: 111 YPRMRAPSFICENETRQGLTLHYRSKRR 138


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 601 CSGYGGF*RRSLTSSYV 551
           C G  GF RRS+T + V
Sbjct: 1   CEGCKGFFRRSITKNAV 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,177
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)