Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o19
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    26   5.5  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    25   9.7  

>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 102 RKLISEKCVEQRMLSSKQQYVGFKC 176
           +KL  ++C+ +  L +K  YVG KC
Sbjct: 62  QKLSRKRCLVEARLLAKCHYVGIKC 86


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 498 RGSCLRQVISRNVLETKQRKPRLFMV 575
           RG  L  +I      TKQ KP LF+V
Sbjct: 116 RGEVLADLIEEWYTTTKQHKPLLFLV 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,180
Number of Sequences: 5004
Number of extensions: 53437
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)