Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o19
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf (pumilio/...    29   3.9  
Z78412-2|CAB01650.1|  169|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81095-1|CAB03158.1|  667|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z77663-5|CAB01215.1|  365|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF100670-1|AAN73858.1|  420|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 4 protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 78  EDYIISIYRKLISEKCVEQRMLSSKQQ 158
           +D  ++IYR +I EKC+ Q +LS  Q+
Sbjct: 346 DDAEMTIYRDVIIEKCLLQNLLSMSQE 372


>Z78412-2|CAB01650.1|  169|Caenorhabditis elegans Hypothetical
           protein M176.3 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -2

Query: 277 YHLEH----ERNEIIRCLQHHPNHVL 212
           YH E+      NEI+RCLQ +P  VL
Sbjct: 120 YHRENVCQDNENEIVRCLQENPGRVL 145


>Z81095-1|CAB03158.1|  667|Caenorhabditis elegans Hypothetical
           protein F59F4.1 protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 274 HLEHERNEIIRCLQHHPNHVL*HKYDRHKDADEHLNP 164
           H  +   +I+  L+H     +   YDR K A EHL P
Sbjct: 479 HHHYTDADIVEDLEHVARKQVFRAYDRLKKAQEHLRP 515


>Z77663-5|CAB01215.1|  365|Caenorhabditis elegans Hypothetical
           protein F53F4.6 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 227 MVLQTSYNFISFMLQM-ISLIPICVVFLLTARLKC 328
           MVLQ S NFI F  Q  + + P+ ++FL  +   C
Sbjct: 1   MVLQFSMNFIIFSFQFPLDIQPVLLLFLYLSPAHC 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,756
Number of Sequences: 27780
Number of extensions: 308621
Number of successful extensions: 756
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)