Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o16
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    29   2.5  
11_02_0052 + 7788655-7789850,7789921-7790011                           29   2.5  
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018...    29   2.5  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    28   7.7  
01_01_0077 - 585670-585787,585921-586687                               28   7.7  

>12_02_0522 -
           19960092-19960595,19962737-19962880,19963042-19963131,
           19963215-19963320,19963400-19963574,19963849-19963951,
           19964382-19964636,19964726-19964803,19964908-19965000,
           19965091-19965222,19965898-19966002,19966127-19966201,
           19966284-19966340,19966419-19966532,19966613-19966756,
           19966886-19966969,19967071-19967164,19967244-19967369,
           19967507-19967580,19967672-19967875,19968234-19968388,
           19968860-19968947,19969505-19969730,19970235-19970286,
           19970766-19970958,19973221-19973314,19973744-19973788,
           19974874-19974896
          Length = 1210

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 570 STEPYTDYFIWTKEQPANWVSKINMPAF 653
           S EP  D+FIWT E    W+ +IN+ ++
Sbjct: 42  SPEPL-DFFIWTVEDVGLWLEEINLGSY 68


>11_02_0052 + 7788655-7789850,7789921-7790011
          Length = 428

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 479 VKQNFEFVQCVTFV-EHFVSRHLDEH 405
           +K + ++  CV F  EHFV+R++D H
Sbjct: 339 IKNDVDYYSCVCFGNEHFVARYIDRH 364


>10_08_0818 +
           20801061-20801298,20801409-20801509,20801600-20801817,
           20802461-20802824
          Length = 306

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 223 PGCACSPGL---LQSLYAHPSAARPNPGH 300
           PG AC P L   L  L  HPS A+P+PG+
Sbjct: 10  PGSACIPLLILLLLLLLLHPSEAQPSPGY 38


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 271 GARTMTA-IAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 152
           G++++TA +         +  NT++ Q++  Q GSSA+ ST
Sbjct: 147 GSQSLTAEVTDQDFFGGTSDQNTDTQQQQLEQSGSSAFDST 187


>01_01_0077 - 585670-585787,585921-586687
          Length = 294

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 240 AGAIAVIVRAPKCGPPEPR 296
           AGA++++VR P   PP+P+
Sbjct: 168 AGAVSIVVRDPSLPPPKPK 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,803,907
Number of Sequences: 37544
Number of extensions: 378392
Number of successful extensions: 1195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)