Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6o16
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical pr... 76 2e-14
Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AF068718-4|AAC17765.1| 98|Caenorhabditis elegans Hypothetical ... 35 0.045
Z81050-6|CAB02856.1| 713|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical pr... 31 0.97
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 30 1.7
Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical p... 29 3.0
AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical ... 29 3.0
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 29 3.9
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 6.8
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z68315-13|CAA92676.1| 148|Caenorhabditis elegans Hypothetical p... 27 9.1
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 27 9.1
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 27 9.1
>Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical
protein F26D10.9a protein.
Length = 613
Score = 76.2 bits (179), Expect = 2e-14
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = +3
Query: 135 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAPKCGPPEPRTWYE 308
G+T+E++ KY +DPFW +R LFVLFW+AW+ M AGAIA++V +PKC + W++
Sbjct: 43 GLTKEQLEKYRNDPFWKPVRTILFVLFWLAWVLMFAGAIAIVVLSPKCAEKQKPDWWQ 100
>Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical
protein C38C6.2 protein.
Length = 647
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +3
Query: 114 PSRKQFTGMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAPKCGPPEP 293
P G++ +E+ ++ +DP W +R LFVLFW+ WL + A AI ++ +P C
Sbjct: 71 PKNTDQIGLSEQELEQFRNDPCWKFIRTVLFVLFWLIWLALFAVAILLVCFSPTCVLRAK 130
Query: 294 RTWYE 308
W++
Sbjct: 131 PNWWQ 135
>AF068718-4|AAC17765.1| 98|Caenorhabditis elegans Hypothetical
protein R01B10.3 protein.
Length = 98
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 135 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIV 263
G + +E+ ++P W R++ +FW W +LAG+I +IV
Sbjct: 35 GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIV 77
>Z81050-6|CAB02856.1| 713|Caenorhabditis elegans Hypothetical
protein C50B6.7 protein.
Length = 713
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 414 QVPTYEVLDKRDTLDEFKILFNKIKKIGIRVIVDLIPNYV 533
Q +Y++ + EF+ + N+ K+G+R+IVD++ N++
Sbjct: 85 QPVSYKLDSRSGNEQEFQDMVNRCNKVGVRIIVDIVMNHM 124
>Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical
protein M163.2 protein.
Length = 500
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 299 CPGFGRAALGCAYNDCNSPGEHAQPGHPEQHEQR 198
C FG A CAY D +S +H + HPE H +
Sbjct: 351 CCDFGSCA--CAYTDPSSLRKHVKSKHPEHHAMK 382
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = -1
Query: 322 TRGPSSYHVLGSGGPHLGART--MTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTS 149
T G SS + S + G+ T TA+ S T +NT S T S+ S S
Sbjct: 814 TYGASSTEPIASSTANPGSSTSGQTAVTTQGSSSTQTNSNTGSTGSTVTNPPVSSSTSGS 873
Query: 148 SLVIPVNCFLEGPGSDAKAKILI 80
S P+ PGS ++
Sbjct: 874 SSTQPIASSTANPGSSTSGTTVV 896
>Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 193 VGRCSCCSGWPGCACSPGLLQSLYAHPSAARPNPGHGTNSVP 318
V C C GW G C +Q+ YA P R N T+++P
Sbjct: 179 VPSCHCPQGWEGTRCDRHYVQAFYA-PINGRYNQS-STSAIP 218
>AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 193 VGRCSCCSGWPGCACSPGLLQSLYAHPSAARPNPGHGTNSVP 318
V C C GW G C +Q+ YA P R N T+++P
Sbjct: 179 VPSCHCPQGWEGTRCDRHYVQAFYA-PINGRYNQS-STSAIP 218
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical protein
F59F5.6 protein.
Length = 1139
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 585 TDYFIWTKEQPANWVSKINMPAFTRS 662
TD +W+ E+ WV +I + F+R+
Sbjct: 1035 TDLLVWSNERVQRWVEEIGLGVFSRN 1060
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 585 TDYFIWTKEQPANWVSKINMPAFTRS 662
TD +W+ E+ WV +I + F+R+
Sbjct: 1035 TDLLVWSNERVQRWVEEIGLGVFSRN 1060
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = -3
Query: 245 PGEHAQPGHPEQHEQR---PTQVHPE 177
P + QP HP QH+Q P Q HP+
Sbjct: 520 PQQQQQPQHPHQHQQPASVPMQHHPQ 545
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = +1
Query: 202 CSCCSGWPGCACS-PGLLQSLYAHPSAARPN 291
C C GW G CS P L + H +PN
Sbjct: 811 CLCNDGWSGSDCSIPRCLTNCTGHGKCIQPN 841
>Z68315-13|CAA92676.1| 148|Caenorhabditis elegans Hypothetical
protein F28C6.10 protein.
Length = 148
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 298 VLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKG 173
V GS + + + +AP S +Q + N+T S + T+KG
Sbjct: 35 VSGSEDVKVSLESKSTVAPTSSVTQKSSNSTESPETDSTEKG 76
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 187 TCVGRCSCCSGWPGCAC 237
T RC C +GW G AC
Sbjct: 682 TTTARCVCFNGWSGVAC 698
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 187 TCVGRCSCCSGWPGCAC 237
T RC C +GW G AC
Sbjct: 682 TTTARCVCFNGWSGVAC 698
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,946
Number of Sequences: 27780
Number of extensions: 329903
Number of successful extensions: 1375
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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