Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o15
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    29   0.40 
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    25   4.9  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   6.5  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   8.6  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   8.6  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    25   8.6  

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -3

Query: 367 SLRLLQTRADGLKLREI*FSNTSPSKSSVLQNLPP 263
           SLR LQ     L +R+  FSNT+PS  S L   PP
Sbjct: 677 SLRNLQDLYKLLAIRDTSFSNTTPSSISKLSIQPP 711


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 298 PSKSSVLQNLPPDRNRDPLKRPGEKLSG 215
           P+K  +LQN+P + N D L +  E  SG
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSG 199


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 364 LRLLQTRADGLKLREI*FSNTSPSKSSVLQNLPPDRNRDPLKRPG-EKLSGLC 209
           +RLL+T+ D LKL E    +T     +V     P RN +P  R    ++ G+C
Sbjct: 160 IRLLETKEDTLKLVER-ICDTGVRAITVHCRTTPMRNTEPADRSYLSEIVGVC 211


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 424 NEFNIFCIPVVFILYLFAGSL 362
           N+F IFC  ++F  Y+ + SL
Sbjct: 105 NDFQIFCTSILFTCYIQSFSL 125


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 272  ILQNTALARASVRKLNFPELEPVRA 346
            + Q TA+   +  K NFP+L+P  A
Sbjct: 934  VFQKTAIQPRANLKFNFPKLKPYEA 958


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 304 TSPSKSSVLQNLPPDRNRDPLKRPGEKLSGLCPWNNSLFVVIEE 173
           TS     VL +LP D     LK P   LS +   N  +  V+EE
Sbjct: 233 TSGRPGPVLVDLPKDVTASVLKEPIPILSSVPSMNRRMKEVLEE 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,344
Number of Sequences: 5004
Number of extensions: 34245
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)