Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o15
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    32   0.30 
04_03_0580 + 17487305-17487469,17487866-17488024                       29   2.8  
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209...    28   5.0  
01_02_0067 - 10800385-10800443,10800539-10800586,10801255-108013...    28   5.0  
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    27   6.5  

>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 376 FAGSLRLLQTRADGLKLREI*FSNTSPSKSSVLQNLPPDRNRDPLKRPGEKLSGLC 209
           F+ ++R++  R   L+ RE+  SN + S + V+  +P    + PL R    L+ LC
Sbjct: 433 FSTAMRIITDREAKLRARELNSSNLNKSANKVISWIPSKDRKSPL-RSAPSLTSLC 487


>04_03_0580 + 17487305-17487469,17487866-17488024
          Length = 107

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 262 DRNRDPLKRPGEKLSGLCPWNNSLFVV 182
           D +R    R GEKL GLCP  ++ F V
Sbjct: 40  DASRPSFDRRGEKLIGLCPIRHNFFRV 66


>03_03_0248 +
           15819264-15819460,15820691-15820729,15820797-15820936,
           15821150-15821225,15822866-15823160,15823236-15823342,
           15823442-15823489,15823568-15823853,15823954-15823961,
           15824083-15824184,15824426-15824553,15824664-15824741,
           15825047-15825145,15825247-15825302
          Length = 552

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 250 DPLKRPGEKLSGLCPWNNSLFVVIEEFDRVGLFRLI 143
           D L +  E   GL PWN    V+I+ FD   L   I
Sbjct: 54  DALYQATEDQQGLIPWNGKQDVLIDRFDGRALLDFI 89


>01_02_0067 -
           10800385-10800443,10800539-10800586,10801255-10801354,
           10801600-10801831,10802130-10802269
          Length = 192

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 381 TYSLVVCVYYRHARTGSSSGKFNFLTLALARAVFCRIY 268
           TY L + VYY  A T  S   +N     L  A  C +Y
Sbjct: 36  TYDLTIMVYYTEASTTQSMHAWNLQIATLFSAYGCFMY 73


>06_03_0875 - 25584789-25585307,25585424-25585570,25585734-25585897,
            25586015-25586172,25586536-25586904,25586998-25587209,
            25587439-25588059,25588561-25588699,25588968-25589044,
            25589120-25589800,25590641-25590889
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 41   VYRYM*LGIYIIICLSKFVCNEIYHVIFANLKTS 142
            VYR+  LG  I   L  F C + +HV F NL  S
Sbjct: 1013 VYRFAWLGCLIFSAL--FFCGKRFHVWFTNLHNS 1044


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,181
Number of Sequences: 37544
Number of extensions: 186726
Number of successful extensions: 344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)