Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte6o15
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    27   7.8  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    27   7.8  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    27   7.8  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    27   7.8  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 301 SPSKSSVLQNLPPDRNRDPLKRP 233
           S S S V++N PP R R+P++ P
Sbjct: 65  SRSSSPVVKNSPPKRKREPIRAP 87


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 62  GIYIIICLSKFVCNEIYHVIFANLKTSD*PEKTDSIEFFDYDEERIIPWTQPTEFL 229
           GIY+ +C ++ V ++++H  F N      P + +++   D   E  +PWT   +FL
Sbjct: 12  GIYVAVCCAQSVEDDVFH--FTN------PSQGNAVWILD---ESSLPWTGGYQFL 56


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 62  GIYIIICLSKFVCNEIYHVIFANLKTSD*PEKTDSIEFFDYDEERIIPWTQPTEFL 229
           GIY+ +C ++ V ++++H  F N      P + +++   D   E  +PWT   +FL
Sbjct: 12  GIYVAVCCAQSVEDDVFH--FTN------PSQGNAVWILD---ESSLPWTGGYQFL 56


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 62  GIYIIICLSKFVCNEIYHVIFANLKTSD*PEKTDSIEFFDYDEERIIPWTQPTEFL 229
           GIY+ +C ++ V ++++H  F N      P + +++   D   E  +PWT   +FL
Sbjct: 12  GIYVAVCCAQSVEDDVFH--FTN------PSQGNAVWILD---ESSLPWTGGYQFL 56


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 62  GIYIIICLSKFVCNEIYHVIFANLKTSD*PEKTDSIEFFDYDEERIIPWTQPTEFL 229
           GIY+ +C ++ V ++++H  F N      P + +++   D   E  +PWT   +FL
Sbjct: 12  GIYVAVCCAQSVEDDVFH--FTN------PSQGNAVWILD---ESSLPWTGGYQFL 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,073
Number of Sequences: 27780
Number of extensions: 183834
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)