Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6o12
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535... 143 1e-34
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246... 30 1.6
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 29 4.8
03_01_0293 - 2258647-2258754,2258861-2259085 29 4.8
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 6.4
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481... 28 8.4
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 28 8.4
08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347... 28 8.4
>10_06_0182 -
11552540-11552606,11552692-11552787,11553458-11553528,
11553660-11553764,11554149-11554239,11554331-11554381,
11554478-11554566,11554667-11554909,11555027-11555190,
11555883-11555988,11556075-11556242,11557456-11557494,
11557582-11557713
Length = 473
Score = 143 bits (346), Expect = 1e-34
Identities = 68/139 (48%), Positives = 91/139 (65%)
Frame = +2
Query: 296 MTSSMNQCNTVTRYLNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPSTHS 475
+++S + +L Q EAA +D+ L FSVDQLMELAGLSVA+A+A+V+ H+
Sbjct: 6 VSASASASGEEVTHLAQREAAEIDEQLMGPLGFSVDQLMELAGLSVAAAVAEVYKLGEHT 65
Query: 476 SALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKRTPKPLYENLLEQCIRFNVNIIDKL 655
L++CGPGNNGGDGLVAARH+ FGY SV YPKRTPKPLY L Q + +
Sbjct: 66 RVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKPLYSGLCTQLESLTIPFVPVE 125
Query: 656 PDPKDLNNEYKVLXDALFG 712
P +L+ E+ ++ DA+FG
Sbjct: 126 DLPANLSEEFDIIIDAMFG 144
>05_01_0315 -
2468267-2468293,2469021-2469070,2469159-2469234,
2469498-2469575,2469967-2470048,2470146-2470238,
2470564-2470673,2470831-2470893,2471293-2471344,
2471421-2471545,2472681-2472794,2472917-2472961,
2473278-2473337,2474725-2474778,2474944-2474992,
2475071-2475252,2475349-2475404,2475491-2475584
Length = 469
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -1
Query: 211 YCFSFTNN-RYVVWFQMSVKIIFYLNPMCM-LPI*VGIIDYTLNGMICIIMYYSLIYIFT 38
YC+S +VW +SV + YL+ C+ + + +I+Y++ + + Y S+ ++F
Sbjct: 83 YCYSLKGRGASLVWLLLSVTYLCYLHGACVSFILLIALINYSI-VKVLEVAYLSIEHMFV 141
Query: 37 NCH 29
+ H
Sbjct: 142 DVH 144
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 338 LNQSEAAALDQDLFTEYKFSVDQLMELAGLSVASAIAKVFPPS-THSSALIVCGPGNNGG 514
L +E D + + ++++ Q + A+A+A FP S T + L +C P ++GG
Sbjct: 322 LRDAERIVYDDNGCSYKQYTISQYFTTSA-GEAAAMATAFPYSFTRTKHLTLCPPSSHGG 380
Query: 515 D 517
D
Sbjct: 381 D 381
>03_01_0293 - 2258647-2258754,2258861-2259085
Length = 110
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 482 LIVCGPGNNGGDGLVAARHMQLFGYNVSVHYP 577
+ V G G GD + RH QLFGY SVH P
Sbjct: 9 MFVGGIGPYTGDEDLR-RHFQLFGYVASVHMP 39
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 389 KFSVDQLMELAGLSVA---SAIAKVFPPSTHSSALIVCGPGNNGGDGLVA 529
K +D++ LAG + S+I+ PPS + + + G G+NGG GL A
Sbjct: 239 KDELDRVCALAGKFLGRPISSISSPGPPSLQACSGLELGVGSNGGFGLGA 288
>12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,
4816803-4816830,4817136-4817339,4817352-4819136,
4820358-4821139
Length = 1241
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 470 HSSALIVCGPGNNGGDGLVAARHMQLFGYNVSVHYPKR 583
H+ ALI CG G+NG + G HY KR
Sbjct: 1178 HAVALIGCGVGSNGNKTETFYKVRNSHGIKAHSHYQKR 1215
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = +2
Query: 431 VASAIAKVFPPSTHSSALIVC-GPGNNGGDGLVAARHMQ-LF-GYNVSVHYPKR-TPKPL 598
VA+ ++ P+T S+A P + + + A H+Q LF G + S P + P+P
Sbjct: 67 VATNLSHSLTPATASAAAAPAPAPADEDSENRLIAFHLQRLFAGEDPSFASPPQIAPQPQ 126
Query: 599 YENLLEQCIRFNVNIIDKLPDPKDLNNEYKVL 694
+ L+ I V LP P N + +V+
Sbjct: 127 PQTLITPAIAAAVTPAPSLPTPPPSNADMEVM 158
>08_02_1176 +
24931728-24931877,24933175-24933275,24934410-24934788,
24935509-24936354,24936555-24936642,24936947-24937039,
24937221-24937318,24937364-24937470,24938266-24938353,
24938748-24939005
Length = 735
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 386 YKFSVDQLMELAGLSVASAIAKVFPPSTHSSALIVCGPGNNGGDGLVAARH 538
+K S ++ + L G S + I KV S+H +A PG GG + ARH
Sbjct: 629 HKESAERALSLNGTSFMARILKVVRRSSHEAAHFYGWPG--GGRTSMYARH 677
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,940,708
Number of Sequences: 37544
Number of extensions: 380240
Number of successful extensions: 862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -