Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte6o07
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 196 1e-50
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 110 1e-24
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 70 2e-12
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 70 2e-12
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 29 2.4
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 29 2.4
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 29 2.4
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 29 2.4
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81064-3|CAB02961.2| 268|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z49909-15|CAF31470.1| 697|Caenorhabditis elegans Hypothetical p... 28 5.6
Z49909-14|CAA90116.2| 717|Caenorhabditis elegans Hypothetical p... 28 5.6
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 7.4
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 7.4
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 28 7.4
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 196 bits (479), Expect = 1e-50
Identities = 81/141 (57%), Positives = 113/141 (80%)
Frame = +1
Query: 277 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 456
M+YAQL++GPAGSGKSTYCS + H + + R + +VNLDPA E F+Y +VD+R+LI ++
Sbjct: 1 MKYAQLVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRDLISVN 60
Query: 457 DAMEDEELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 636
D EDEEL GPNG LVFC+E L++N +WL ++L + +DDY + DCPGQIELY+HLPVMR
Sbjct: 61 DVQEDEELILGPNGALVFCMEYLVQNLEWLHDELDEGEDDYFVIDCPGQIELYSHLPVMR 120
Query: 637 RLVDLLQNWNFRICVVFLVDS 699
++VD L++W+F +C VFL+D+
Sbjct: 121 QIVDALKSWDFNVCSVFLIDT 141
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 110 bits (264), Expect = 1e-24
Identities = 53/139 (38%), Positives = 82/139 (58%)
Frame = +1
Query: 283 YAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDA 462
Y L++G G+GKST+C+ + +KR +NLDPA + Y P V+I E+I ++D
Sbjct: 2 YGVLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDTMAYAPDVNITEMITVNDV 61
Query: 463 MEDEELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRL 642
M+ L GPNG L +CIETL N +WL +++ Y++ DCPGQ+ELY + ++
Sbjct: 62 MD--RLGLGPNGALKYCIETLGANCNWLLQKIEANHKKYLIIDCPGQLELYKSEGELWKV 119
Query: 643 VDLLQNWNFRICVVFLVDS 699
+ L+ R+C + L DS
Sbjct: 120 IRFLEKSGVRLCALHLADS 138
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Frame = +1
Query: 292 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMED 471
L++G AGSGK+T+ + K V+NLDPA Y VDIR+ + + M
Sbjct: 34 LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVM-- 91
Query: 472 EELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDY--ILFDCPGQIELYTHLPVMRRLV 645
+E GPNG ++ C+ + D + E + D+ L D PGQIE +T +
Sbjct: 92 KEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFTWSASGSIIT 151
Query: 646 DLLQNWNFRICVVFLVDS 699
D L + + V+++VDS
Sbjct: 152 DSLAS-SHPTVVMYIVDS 168
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Frame = +1
Query: 292 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMED 471
L++G AGSGK+T+ + K V+NLDPA Y VDIR+ + + M
Sbjct: 34 LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVM-- 91
Query: 472 EELQFGPNGGLVFCIETLLENSDWLEEQLGDVDDDY--ILFDCPGQIELYTHLPVMRRLV 645
+E GPNG ++ C+ + D + E + D+ L D PGQIE +T +
Sbjct: 92 KEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFTWSASGSIIT 151
Query: 646 DLLQNWNFRICVVFLVDS 699
D L + + V+++VDS
Sbjct: 152 DSLAS-SHPTVVMYIVDS 168
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNL 390
+VGP+GSGKST S + + HA+D + +D N+
Sbjct: 1069 LVGPSGSGKSTIISLLERFYHAVDGEVKIDEENV 1102
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.5 bits (63), Expect = 2.4
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 LDLNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPL 426
L+LN+ RY ++G GSGKST I M VD+ + PA+E + +
Sbjct: 102 LELNRGR-RYG--LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAV 158
Query: 427 VDI----RELIHLDD---AMEDEELQ 483
VD+ +EL HL + + DEE Q
Sbjct: 159 VDVDSVRKELEHLAEQLASQTDEESQ 184
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical protein
T21E8.1b protein.
Length = 1204
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 393
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 990 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1024
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.1a protein.
Length = 1263
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 393
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1083
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.2 protein.
Length = 1263
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 295 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 393
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1083
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 29.5 bits (63), Expect = 2.4
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 LDLNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPL 426
L+LN+ RY ++G GSGKST I M VD+ + PA+E + +
Sbjct: 101 LELNRGR-RYG--LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAV 157
Query: 427 VDI----RELIHLDD---AMEDEELQ 483
VD+ +EL HL + + DEE Q
Sbjct: 158 VDVDSVRKELEHLAEQLASQTDEESQ 183
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.5 bits (63), Expect = 2.4
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 LDLNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPL 426
L+LN+ RY ++G GSGKST I M VD+ + PA+E + +
Sbjct: 102 LELNRGR-RYG--LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAV 158
Query: 427 VDI----RELIHLDD---AMEDEELQ 483
VD+ +EL HL + + DEE Q
Sbjct: 159 VDVDSVRKELEHLAEQLASQTDEESQ 184
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 280 RYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAA 402
R ++VG AGSGKST + + + +K+ + V +P A
Sbjct: 1914 RIGVVVVGAAGSGKSTIWKILQRSLILTKKPLKVTQFNPKA 1954
>Z81064-3|CAB02961.2| 268|Caenorhabditis elegans Hypothetical
protein F16B12.4 protein.
Length = 268
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 517 ETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRL 642
E L E D++EE+ + DDD + G+ +TH + R L
Sbjct: 59 ENLAEIPDFIEEKCDEFDDDEYILQPTGEDSKFTHNDMNRVL 100
>Z49909-15|CAF31470.1| 697|Caenorhabditis elegans Hypothetical
protein C14A4.12b protein.
Length = 697
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 222 LERIGYLCIAACFLIASLSFLNFELQDVFCKLYY 121
L ++ ++ +A FLI SLS +N L +F K +Y
Sbjct: 358 LNKLIFVGFSAFFLIISLSLINVNLYALFTKQFY 391
>Z49909-14|CAA90116.2| 717|Caenorhabditis elegans Hypothetical
protein C14A4.12a protein.
Length = 717
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 222 LERIGYLCIAACFLIASLSFLNFELQDVFCKLYY 121
L ++ ++ +A FLI SLS +N L +F K +Y
Sbjct: 378 LNKLIFVGFSAFFLIISLSLINVNLYALFTKQFY 411
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
protein R13G10.1 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 192 QLCKDNLFVLTKNINRVNNSCFRSKQKNNALRSV 293
++ DN +T+ INR NNS +R K+ + + V
Sbjct: 185 EVLTDNCVCITRTINRENNSKYRIDDKDASQKDV 218
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 192 QLCKDNLFVLTKNINRVNNSCFRSKQKNNALRSV 293
++ DN +T+ INR NNS +R K+ + + V
Sbjct: 185 EVLTDNCVCITRTINRENNSKYRIDDKDASQKDV 218
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 268 KKTMRYAQL--IVGPAGSGKSTYCSTIVKHAMDSKRIV 375
K T Y L I G G +S YC+ I++H + +K ++
Sbjct: 117 KFTAEYRDLLAITGDQGGYRSIYCAHIIQHLIRNKNLI 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,193
Number of Sequences: 27780
Number of extensions: 330909
Number of successful extensions: 1055
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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